-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2166

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 33, 110
Couldn't classify 506, 704
Sorry, prediction snap_scaffold_2166-snap.1-T1 fails validation.
(GGA)	 AG	33-110	GT	GGG
(CAA)	 AG	506-704	GT	ATG
-recovered snap_scaffold_2166-snap.1-T1, internal, 33, 110
-recovered snap_scaffold_2166-snap.1-T1, internal, 506, 704
Couldn't classify 33, 110
Couldn't classify 954, 962
Sorry, prediction GeneMark_model.110097_t fails validation.
(GGA)	 AG	33-110	GT	GGG
(TGG)	 AG	145-231	GT	CCG
(TGT)	 AG	278-315	GT	AGG
(GGA)	 AG	918-932	GT	GCG
(GGC)	 AG	954-962	GT	GGG
-recovered GeneMark_model.110097_t, internal, 33, 110
-recovered GeneMark_model.110097_t, internal, 145, 231
-recovered GeneMark_model.110097_t, internal, 278, 315
-recovered GeneMark_model.110097_t, internal, 918, 932
-recovered GeneMark_model.110097_t, internal, 954, 962

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1524
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support