-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2165

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.110095_t
add_exon() Sorry, GeneMark_model.110095_t 271-598-internal-2 is invalid.
add_exon() Sorry, GeneMark_model.110095_t 642-770-terminal-3 is invalid.
add_exon() Sorry, Augustus_model.g41980.t1 111-240-single-1 is invalid.
Couldn't classify 605, 749
Sorry, prediction snap_scaffold_2165-snap.1-T1 fails validation.
(ATG)	 AG	111-236	GT	AAG
(AGA)	 AG	605-749	GT	TGG
add_exon() Sorry, snap_scaffold_2165-snap.1-T1 111-236-initial-1 is invalid.
-recovered snap_scaffold_2165-snap.1-T1, initial, 111, 236
-recovered snap_scaffold_2165-snap.1-T1, internal, 111, 236
-recovered snap_scaffold_2165-snap.1-T1, internal, 605, 749

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 440, 518
Sorry, prediction GeneMark_model.110096_t fails validation.
(AGG)	 AG	440-518	GT	AGG
(AAG)	 AG	626-676	GT	AAG
(GAG)	 AG	703-733	GA	AGG
-recovered GeneMark_model.110096_t, terminal, 703, 733
-recovered GeneMark_model.110096_t, internal, 440, 518
-recovered GeneMark_model.110096_t, internal, 626, 676

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1524
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support