-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2164

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 143, 266
Sorry, prediction Augustus_model.g41979.t1 fails validation.
(GGA)	 AG	143-266	GT	AGG
(GTA)	 AG	526-725	GT	AGG
(GCA)	 AG	902-1025	TG	GAT
-recovered Augustus_model.g41979.t1, terminal, 902, 1025
-recovered Augustus_model.g41979.t1, internal, 143, 266
-recovered Augustus_model.g41979.t1, internal, 526, 725
Couldn't classify 143, 266
Sorry, prediction snap_scaffold_2164-snap.1-T1 fails validation.
(GGA)	 AG	143-266	GT	AGG
(GTA)	 AG	526-725	GT	AGG
(GCA)	 AG	902-1025	TG	GAT
-recovered snap_scaffold_2164-snap.1-T1, terminal, 902, 1025
-recovered snap_scaffold_2164-snap.1-T1, internal, 143, 266
-recovered snap_scaffold_2164-snap.1-T1, internal, 526, 725
Valid prediction for GlimmerHMM_glimmerT_63007-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1063, 1203
Sorry, prediction GeneMark_model.110094_t fails validation.
(ATG)	 TC	605-639	GT	AGG
(AAT)	 AG	662-671	GT	GGG
(GCC)	 AG	963-1033	GT	CAG
(AAG)	 AG	1063-1203	GT	ACG
-recovered GeneMark_model.110094_t, initial, 605, 639
-recovered GeneMark_model.110094_t, internal, 662, 671
-recovered GeneMark_model.110094_t, internal, 963, 1033
-recovered GeneMark_model.110094_t, internal, 1063, 1203

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1526
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support