-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2163

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 559, 577
Sorry, prediction GeneMark_model.110093_t fails validation.
(ATG)	 TC	264-398	GT	GGG
(AAG)	 AG	423-535	GT	AAG
(GAG)	 AG	559-577	GT	GAG
-recovered GeneMark_model.110093_t, initial, 264, 398
-recovered GeneMark_model.110093_t, internal, 423, 535
-recovered GeneMark_model.110093_t, internal, 559, 577
Couldn't classify 951, 1058
Sorry, prediction Augustus_model.g41978.t1 fails validation.
(ATG)	 TC	264-525	GT	AGG
(CAC)	 AG	951-1058	GT	AGG
-recovered Augustus_model.g41978.t1, initial, 264, 525
-recovered Augustus_model.g41978.t1, internal, 951, 1058
Valid prediction for GlimmerHMM_glimmerT_63006-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63006-T1 274-539-terminal-1 is invalid.
Valid prediction for snap_scaffold_2163-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1526
-exon list size: 8


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support