-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2162

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 65, 283
Sorry, prediction GeneMark_model.110091_t fails validation.
(GTT)	 AG	65-283	GT	AGG
(TCT)	 AG	827-889	GT	AGG
-recovered GeneMark_model.110091_t, terminal, 827, 889
-recovered GeneMark_model.110091_t, internal, 65, 283
-recovered GeneMark_model.110091_t, internal, 827, 889
Couldn't classify 65, 283
Couldn't classify 963, 1032
Sorry, prediction snap_scaffold_2162-snap.1-T1 fails validation.
(GTT)	 AG	65-283	GT	AGG
(GTC)	 AG	963-1032	GT	CAG
-recovered snap_scaffold_2162-snap.1-T1, internal, 65, 283
-recovered snap_scaffold_2162-snap.1-T1, internal, 963, 1032
Couldn't classify 65, 283
Sorry, prediction Augustus_model.g41977.t1 fails validation.
(GTT)	 AG	65-283	GT	AGG
(TCT)	 AG	827-889	GT	AGG
-recovered Augustus_model.g41977.t1, terminal, 827, 889
-recovered Augustus_model.g41977.t1, internal, 65, 283
-recovered Augustus_model.g41977.t1, internal, 827, 889

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 38, 46
Sorry, prediction GeneMark_model.110092_t fails validation.
(AGA)	 AG	38-46	GT	CAG
(AGG)	 AG	68-103	GT	GAG
(AGA)	 AG	125-190	GT	GAG
(AGA)	 AG	214-273	GT	GAG
(AGG)	 AG	324-356	GT	GAG
(AGA)	 AG	579-588	AG	AGA
-recovered GeneMark_model.110092_t, terminal, 579, 588
-recovered GeneMark_model.110092_t, internal, 38, 46
-recovered GeneMark_model.110092_t, internal, 68, 103
-recovered GeneMark_model.110092_t, internal, 125, 190
-recovered GeneMark_model.110092_t, internal, 214, 273
-recovered GeneMark_model.110092_t, internal, 324, 356

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1526
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support