-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2161

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 62, 70
Couldn't classify 1477, 1495
Sorry, prediction GeneMark_model.110090_t fails validation.
(GGG)	 AG	62-70	GT	AAG
(AGA)	 AG	177-185	GT	GGG
(AGG)	 AG	225-239	GT	GGG
(AGA)	 AG	263-271	GT	GGG
(GGG)	 AG	309-317	GT	GGG
(AGA)	 AG	347-355	GT	GGG
(AGG)	 AG	391-399	GT	GGG
(GTT)	 AG	429-434	GT	GGG
(AGA)	 AG	476-484	GT	GGG
(AGA)	 AG	518-523	GT	AGG
(AGA)	 AG	577-585	GT	GGG
(GTT)	 AG	627-632	GT	GGG
(AGA)	 AG	656-664	GT	GGG
(AGG)	 AG	694-705	GT	GGG
(AGA)	 AG	729-752	GT	GGG
(AGA)	 AG	830-838	GT	GGG
(AGA)	 AG	870-881	GT	AGG
(GTT)	 AG	931-936	GT	GGG
(GTT)	 AG	1066-1071	GT	GGG
(GGT)	 AG	1113-1121	GT	GGG
(AGA)	 AG	1153-1170	GT	GGG
(GTT)	 AG	1213-1218	GT	AGG
(GTT)	 AG	1262-1267	GT	GGG
(GGG)	 AG	1421-1429	GT	GGG
(AGA)	 AG	1477-1495	GT	GGG
-recovered GeneMark_model.110090_t, terminal, 870, 881
-recovered GeneMark_model.110090_t, internal, 62, 70
-recovered GeneMark_model.110090_t, internal, 177, 185
-recovered GeneMark_model.110090_t, internal, 225, 239
-recovered GeneMark_model.110090_t, internal, 263, 271
-recovered GeneMark_model.110090_t, internal, 309, 317
-recovered GeneMark_model.110090_t, internal, 347, 355
-recovered GeneMark_model.110090_t, internal, 391, 399
-recovered GeneMark_model.110090_t, internal, 429, 434
-recovered GeneMark_model.110090_t, internal, 476, 484
-recovered GeneMark_model.110090_t, internal, 518, 523
-recovered GeneMark_model.110090_t, internal, 577, 585
-recovered GeneMark_model.110090_t, internal, 627, 632
-recovered GeneMark_model.110090_t, internal, 656, 664
-recovered GeneMark_model.110090_t, internal, 694, 705
-recovered GeneMark_model.110090_t, internal, 729, 752
-recovered GeneMark_model.110090_t, internal, 830, 838
-recovered GeneMark_model.110090_t, internal, 870, 881
-recovered GeneMark_model.110090_t, internal, 931, 936
-recovered GeneMark_model.110090_t, internal, 1066, 1071
-recovered GeneMark_model.110090_t, internal, 1113, 1121
-recovered GeneMark_model.110090_t, internal, 1153, 1170
-recovered GeneMark_model.110090_t, internal, 1213, 1218
-recovered GeneMark_model.110090_t, internal, 1262, 1267
-recovered GeneMark_model.110090_t, internal, 1421, 1429
-recovered GeneMark_model.110090_t, internal, 1477, 1495

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1527
-exon list size: 61


building trellis

1.6    
3.2    
4.8    
6.3    
7.9    
9.5    
11.1    
12.7    
14.3    
15.9    
17.5    
19.0    
20.6    
22.2    
23.8    
25.4    
27.0    
28.6    
30.2    
31.7    
33.3    
34.9    
36.5    
38.1    
39.7    
41.3    
42.9    
44.4    
46.0    
47.6    
49.2    
50.8    
52.4    
54.0    
55.6    
57.1    
58.7    
60.3    
61.9    
63.5    
65.1    
66.7    
68.3    
69.8    
71.4    
73.0    
74.6    
76.2    
77.8    
79.4    
81.0    
82.5    
84.1    
85.7    
87.3    
88.9    
90.5    
92.1    
93.7    
95.2    
96.8    
98.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support