-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2160

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1480, 1492
Sorry, prediction GeneMark_model.110089_t fails validation.
(ATG)	 TC	678-697	GT	GAG
(AGA)	 AG	1275-1424	GT	GAG
(GAC)	 AG	1480-1492	GT	GAG
-recovered GeneMark_model.110089_t, initial, 678, 697
-recovered GeneMark_model.110089_t, internal, 1275, 1424
-recovered GeneMark_model.110089_t, internal, 1480, 1492
Couldn't classify 612, 700
Sorry, prediction snap_scaffold_2160-snap.1-T1 fails validation.
(GCG)	 AG	612-700	GT	TGG
(AGA)	 AG	1180-1428	GG	AGG
-recovered snap_scaffold_2160-snap.1-T1, terminal, 1180, 1428
-recovered snap_scaffold_2160-snap.1-T1, internal, 612, 700

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.110088_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1528
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support