-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_216

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 876, 1092
Sorry, prediction Augustus_model.g40916.t1 fails validation.
(CCC)	 AG	876-1092	GT	AGG
(CGT)	 AG	3806-3981	TT	GAT
-recovered Augustus_model.g40916.t1, terminal, 3806, 3981
-recovered Augustus_model.g40916.t1, internal, 876, 1092
Valid prediction for GlimmerHMM_glimmerT_61524-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61524-T1 3806-3981-terminal-1 is invalid.
Couldn't classify 940, 1092
Sorry, prediction snap_scaffold_216-snap.2-T1 fails validation.
(AGC)	 AG	940-1092	GT	AGG
(CGT)	 AG	3806-3945	GT	TGG
(CTA)	 AG	4617-4688	AA	AGA
-recovered snap_scaffold_216-snap.2-T1, terminal, 4617, 4688
-recovered snap_scaffold_216-snap.2-T1, internal, 940, 1092
-recovered snap_scaffold_216-snap.2-T1, internal, 3806, 3945

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_216-snap.4-T1
Valid prediction for GeneMark_model.106965_t
Valid prediction for snap_scaffold_216-snap.3-T1
Valid prediction for GeneMark_model.106964_t
Valid prediction for GlimmerHMM_glimmerT_61525-T1
Valid prediction for GeneMark_model.106963_t
Valid prediction for Augustus_model.g40917.t1
Couldn't classify 8435, 8625
Sorry, prediction snap_scaffold_216-snap.1-T1 fails validation.
(ATG)	 CA	4979-4982	GT	GTG
(GGA)	 AG	5546-5579	GT	CGG
(CCC)	 AG	5625-5817	GT	AGG
(GAG)	 AG	5837-6112	GT	AGG
(GTG)	 AG	8435-8625	GT	AGG
-recovered snap_scaffold_216-snap.1-T1, initial, 4979, 4982
-recovered snap_scaffold_216-snap.1-T1, internal, 5546, 5579
-recovered snap_scaffold_216-snap.1-T1, internal, 5625, 5817
-recovered snap_scaffold_216-snap.1-T1, internal, 5837, 6112
-recovered snap_scaffold_216-snap.1-T1, internal, 8435, 8625

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4489, rend_intergenic: 940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9467
-exon list size: 62


building trellis

1.6    
3.1    
4.7    
6.2    
7.8    
9.4    
10.9    
12.5    
14.1    
15.6    
17.2    
18.8    
20.3    
21.9    
23.4    
25.0    
26.6    
28.1    
29.7    
31.2    
32.8    
34.4    
35.9    
37.5    
39.1    
40.6    
42.2    
43.8    
45.3    
46.9    
48.4    
50.0    
51.6    
53.1    
54.7    
56.2    
57.8    
59.4    
60.9    
62.5    
64.1    
65.6    
67.2    
68.8    
70.3    
71.9    
73.4    
75.0    
76.6    
78.1    
79.7    
81.2    
82.8    
84.4    
85.9    
87.5    
89.1    
90.6    
92.2    
93.8    
95.3    
96.9    
98.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4489, rend_intergenic: 940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support