-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2158

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1065, 1145
Sorry, prediction GeneMark_model.110087_t fails validation.
(ATG)	 CT	964-995	GT	CTG
(ATG)	 AG	1020-1031	GT	AGG
(AGA)	 AG	1065-1145	GT	GGG
-recovered GeneMark_model.110087_t, initial, 964, 995
-recovered GeneMark_model.110087_t, initial, 1020, 1031
-recovered GeneMark_model.110087_t, internal, 1020, 1031
-recovered GeneMark_model.110087_t, internal, 1065, 1145

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 537, 608
Couldn't classify 891, 962
Sorry, prediction Augustus_model.g41976.t1 fails validation.
(ACA)	 AG	537-608	GT	CTG
(TCG)	 AG	891-962	GT	CTG
-recovered Augustus_model.g41976.t1, internal, 537, 608
-recovered Augustus_model.g41976.t1, internal, 891, 962
Couldn't classify 61, 132
Couldn't classify 891, 962
Sorry, prediction snap_scaffold_2158-snap.1-T1 fails validation.
(GGA)	 AG	61-132	GT	CTG
(ACA)	 AG	537-608	GT	CTG
(TCG)	 AG	891-962	GT	CTG
-recovered snap_scaffold_2158-snap.1-T1, internal, 61, 132
-recovered snap_scaffold_2158-snap.1-T1, internal, 537, 608
-recovered snap_scaffold_2158-snap.1-T1, internal, 891, 962
Valid prediction for GlimmerHMM_glimmerT_63005-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1529
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support