-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2154

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 955, 964
Sorry, prediction GeneMark_model.110083_t fails validation.
(ATG)	 TG	80-326	GT	GGG
(CTG)	 AG	352-428	GT	GGG
(ACG)	 AG	450-553	GT	AGG
(AGA)	 AG	622-711	GT	GGG
(AAG)	 AG	733-759	GT	GGG
(AGA)	 AG	795-839	GT	GGG
(AGA)	 AG	864-884	GT	GGG
(GGC)	 AG	910-921	GT	GGG
(CAC)	 AG	955-964	GT	TAG
-recovered GeneMark_model.110083_t, initial, 80, 326
-recovered GeneMark_model.110083_t, internal, 352, 428
-recovered GeneMark_model.110083_t, internal, 450, 553
-recovered GeneMark_model.110083_t, internal, 622, 711
-recovered GeneMark_model.110083_t, internal, 733, 759
-recovered GeneMark_model.110083_t, internal, 795, 839
-recovered GeneMark_model.110083_t, internal, 864, 884
-recovered GeneMark_model.110083_t, internal, 910, 921
-recovered GeneMark_model.110083_t, internal, 955, 964

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 938, 1480
Sorry, prediction snap_scaffold_2154-snap.1-T1 fails validation.
(AGA)	 AG	938-1480	GT	AGG
-recovered snap_scaffold_2154-snap.1-T1, internal, 938, 1480
Valid prediction for GlimmerHMM_glimmerT_63002-T1
Valid prediction for Augustus_model.g41973.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1534
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support