-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2153

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 36, 152
Sorry, prediction GeneMark_model.110081_t fails validation.
(GAG)	 AG	36-152	GT	AGG
(GAG)	 AG	175-334	GG	GAG
-recovered GeneMark_model.110081_t, terminal, 175, 334
-recovered GeneMark_model.110081_t, internal, 36, 152

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 356, 501
Couldn't classify 1223, 1433
Sorry, prediction snap_scaffold_2153-snap.1-T1 fails validation.
(GTG)	 AG	356-501	GT	AGG
(GCC)	 AG	1223-1433	GT	TGG
-recovered snap_scaffold_2153-snap.1-T1, internal, 356, 501
-recovered snap_scaffold_2153-snap.1-T1, internal, 1223, 1433
Couldn't classify 356, 501
Couldn't classify 1223, 1433
Sorry, prediction Augustus_model.g41972.t1 fails validation.
(GTG)	 AG	356-501	GT	AGG
(GCC)	 AG	1223-1433	GT	TGG
-recovered Augustus_model.g41972.t1, internal, 356, 501
-recovered Augustus_model.g41972.t1, internal, 1223, 1433
Valid prediction for GlimmerHMM_glimmerT_63001-T1
Couldn't classify 33, 76
Sorry, prediction GeneMark_model.110082_t fails validation.
(GGG)	 AG	33-76	GT	GAG
(ATG)	 AG	365-501	GT	AGG
(TCA)	 AG	582-596	GA	AAG
add_exon() Sorry, GeneMark_model.110082_t 365-501-initial-1 is invalid.
-recovered GeneMark_model.110082_t, initial, 365, 501
-recovered GeneMark_model.110082_t, terminal, 582, 596
-recovered GeneMark_model.110082_t, internal, 33, 76
-recovered GeneMark_model.110082_t, internal, 365, 501

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1539
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support