-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2152

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 500, 530
Sorry, prediction GeneMark_model.110080_t fails validation.
(CAG)	 AG	500-530	GT	GGG
(ACT)	 AG	571-654	GT	AAG
(AGA)	 AG	749-793	GT	CTG
(GTT)	 AG	816-848	GT	GGG
(GAG)	 AG	870-890	GT	GTG
(GGA)	 AG	913-924	GT	AGG
(CGG)	 AG	945-959	GT	GTG
(GGA)	 AG	980-994	GT	GTG
(GGA)	 AG	1015-1069	AT	GAA
-recovered GeneMark_model.110080_t, terminal, 1015, 1069
-recovered GeneMark_model.110080_t, internal, 500, 530
-recovered GeneMark_model.110080_t, internal, 571, 654
-recovered GeneMark_model.110080_t, internal, 749, 793
-recovered GeneMark_model.110080_t, internal, 816, 848
-recovered GeneMark_model.110080_t, internal, 870, 890
-recovered GeneMark_model.110080_t, internal, 913, 924
-recovered GeneMark_model.110080_t, internal, 945, 959
-recovered GeneMark_model.110080_t, internal, 980, 994

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1539
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support