-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2147

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62999-T1
Couldn't classify 1430, 1487
Sorry, prediction GeneMark_model.110076_t fails validation.
(ATG)	 CC	215-405	GT	ATG
(TCT)	 AG	1205-1276	GT	AGG
(GAG)	 AG	1430-1487	GT	CGG
-recovered GeneMark_model.110076_t, initial, 215, 405
-recovered GeneMark_model.110076_t, internal, 1205, 1276
-recovered GeneMark_model.110076_t, internal, 1430, 1487
Valid prediction for snap_scaffold_2147-snap.1-T1
add_exon() Sorry, snap_scaffold_2147-snap.1-T1 165-457-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1544
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support