-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2145

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2145-snap.1-T1
Couldn't classify 546, 847
Couldn't classify 1353, 1529
Sorry, prediction GeneMark_model.110074_t fails validation.
(GGC)	 AG	546-847	GT	TTG
(AAT)	 AG	866-1027	GT	GGG
(GAA)	 AG	1068-1178	GT	CGG
(GGT)	 AG	1202-1229	GT	GGG
(GAG)	 AG	1254-1303	GT	AGG
(TGT)	 AG	1353-1529	GC	CGG
-recovered GeneMark_model.110074_t, internal, 546, 847
-recovered GeneMark_model.110074_t, internal, 866, 1027
-recovered GeneMark_model.110074_t, internal, 1068, 1178
-recovered GeneMark_model.110074_t, internal, 1202, 1229
-recovered GeneMark_model.110074_t, internal, 1254, 1303
-recovered GeneMark_model.110074_t, internal, 1353, 1529
Valid prediction for GlimmerHMM_glimmerT_62997-T1
Valid prediction for Augustus_model.g41970.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1544
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support