-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2144

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 233, 275
Couldn't classify 662, 728
Sorry, prediction GeneMark_model.110073_t fails validation.
(AGG)	 AG	233-275	GT	AGG
(ACT)	 AG	306-311	GT	AGG
(AGA)	 AG	554-583	GT	AGG
(ACA)	 AG	662-728	GT	GCG
-recovered GeneMark_model.110073_t, internal, 233, 275
-recovered GeneMark_model.110073_t, internal, 306, 311
-recovered GeneMark_model.110073_t, internal, 554, 583
-recovered GeneMark_model.110073_t, internal, 662, 728
Couldn't classify 1068, 1153
Sorry, prediction Augustus_model.g41969.t1 fails validation.
(ATG)	 GC	433-455	GT	AGG
(CCC)	 AG	653-728	GT	GCG
(GAG)	 AG	1068-1153	GT	AGG
-recovered Augustus_model.g41969.t1, initial, 433, 455
-recovered Augustus_model.g41969.t1, internal, 653, 728
-recovered Augustus_model.g41969.t1, internal, 1068, 1153
Couldn't classify 233, 329
Couldn't classify 1068, 1153
Sorry, prediction snap_scaffold_2144-snap.1-T1 fails validation.
(AGG)	 AG	233-329	GT	AGG
(CAG)	 AG	659-728	GT	GCG
(GAG)	 AG	1068-1153	GT	AGG
-recovered snap_scaffold_2144-snap.1-T1, internal, 233, 329
-recovered snap_scaffold_2144-snap.1-T1, internal, 659, 728
-recovered snap_scaffold_2144-snap.1-T1, internal, 1068, 1153

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1544
-exon list size: 18


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support