-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2143

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 9, 169
Sorry, prediction GeneMark_model.110072_t fails validation.
(GGG)	 AG	9-169	GT	GAG
(AGA)	 AG	190-196	GT	GGG
(CCT)	 AG	390-412	GT	GGG
(ACA)	 AG	436-513	GT	GAG
(AGA)	 AG	535-555	GT	GAG
(AGA)	 AG	579-605	GT	GAG
(AAA)	 AG	657-701	GT	TTG
(GAA)	 AG	948-1053	GT	GAG
-recovered GeneMark_model.110072_t, terminal, 948, 1053
-recovered GeneMark_model.110072_t, internal, 9, 169
-recovered GeneMark_model.110072_t, internal, 190, 196
-recovered GeneMark_model.110072_t, internal, 390, 412
-recovered GeneMark_model.110072_t, internal, 436, 513
-recovered GeneMark_model.110072_t, internal, 535, 555
-recovered GeneMark_model.110072_t, internal, 579, 605
-recovered GeneMark_model.110072_t, internal, 657, 701
-recovered GeneMark_model.110072_t, internal, 948, 1053
Valid prediction for snap_scaffold_2143-snap.1-T1
add_exon() Sorry, snap_scaffold_2143-snap.1-T1 859-1053-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1548
-exon list size: 18


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support