-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2142

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 678, 683
Couldn't classify 1503, 1508
Sorry, prediction GeneMark_model.110071_t fails validation.
(AGT)	 AG	678-683	GT	GAG
(TAG)	 AG	705-743	GT	GAG
(TAT)	 AG	785-793	GT	GAG
(AGT)	 AG	818-838	GT	GAG
(AGT)	 AG	878-898	GT	GAG
(GAC)	 AG	923-928	GT	GAG
(AGC)	 AG	953-988	GT	GAG
(AGT)	 AG	1013-1048	GT	GAG
(AGT)	 AG	1073-1093	GT	GAG
(AGT)	 AG	1118-1123	GT	GAG
(AGC)	 AG	1148-1168	GT	GAG
(AGC)	 AG	1193-1213	GT	GAG
(AGT)	 AG	1238-1243	GT	GAG
(GAC)	 AG	1268-1288	GT	GAG
(AGC)	 AG	1313-1348	GT	GAG
(AGT)	 AG	1383-1388	GT	GAG
(AGC)	 AG	1413-1418	GT	GAG
(AGT)	 AG	1443-1448	GT	GAG
(AGC)	 AG	1473-1478	GT	GAG
(AGT)	 AG	1503-1508	GT	GAG
-recovered GeneMark_model.110071_t, internal, 678, 683
-recovered GeneMark_model.110071_t, internal, 705, 743
-recovered GeneMark_model.110071_t, internal, 785, 793
-recovered GeneMark_model.110071_t, internal, 818, 838
-recovered GeneMark_model.110071_t, internal, 878, 898
-recovered GeneMark_model.110071_t, internal, 923, 928
-recovered GeneMark_model.110071_t, internal, 953, 988
-recovered GeneMark_model.110071_t, internal, 1013, 1048
-recovered GeneMark_model.110071_t, internal, 1073, 1093
-recovered GeneMark_model.110071_t, internal, 1118, 1123
-recovered GeneMark_model.110071_t, internal, 1148, 1168
-recovered GeneMark_model.110071_t, internal, 1193, 1213
-recovered GeneMark_model.110071_t, internal, 1238, 1243
-recovered GeneMark_model.110071_t, internal, 1268, 1288
-recovered GeneMark_model.110071_t, internal, 1313, 1348
-recovered GeneMark_model.110071_t, internal, 1383, 1388
-recovered GeneMark_model.110071_t, internal, 1413, 1418
-recovered GeneMark_model.110071_t, internal, 1443, 1448
-recovered GeneMark_model.110071_t, internal, 1473, 1478
-recovered GeneMark_model.110071_t, internal, 1503, 1508

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1548
-exon list size: 42


building trellis

2.3    
4.5    
6.8    
9.1    
11.4    
13.6    
15.9    
18.2    
20.5    
22.7    
25.0    
27.3    
29.5    
31.8    
34.1    
36.4    
38.6    
40.9    
43.2    
45.5    
47.7    
50.0    
52.3    
54.5    
56.8    
59.1    
61.4    
63.6    
65.9    
68.2    
70.5    
72.7    
75.0    
77.3    
79.5    
81.8    
84.1    
86.4    
88.6    
90.9    
93.2    
95.5    
97.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support