-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2141

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 772, 879
Couldn't classify 901, 1518
Sorry, prediction GeneMark_model.110070_t fails validation.
(AGA)	 AG	772-879	GT	CAG
(AGA)	 AG	901-1518	GT	CAG
-recovered GeneMark_model.110070_t, internal, 772, 879
-recovered GeneMark_model.110070_t, internal, 901, 1518
Couldn't classify 749, 879
Sorry, prediction snap_scaffold_2141-snap.1-T1 fails validation.
(AGA)	 AG	749-879	GT	CAG
(AGA)	 AG	884-1522	AG	AGA
-recovered snap_scaffold_2141-snap.1-T1, terminal, 884, 1522
-recovered snap_scaffold_2141-snap.1-T1, internal, 749, 879
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_62996-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62996-T1 749-999-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1548
-exon list size: 8


building trellis

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50.0    
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70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support