-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2140

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 35, 81
Couldn't classify 1401, 1451
Sorry, prediction GeneMark_model.110069_t fails validation.
(GGG)	 AG	35-81	GC	AGG
(GAG)	 AG	275-280	GT	GAG
(AGA)	 AG	454-529	GT	AGG
(AGT)	 AG	749-760	GT	AGG
(GGA)	 AG	781-816	GT	GAG
(GTT)	 AG	844-849	GT	AAG
(AGA)	 AG	872-877	GT	AGG
(AGA)	 AG	902-925	GT	AGG
(AGA)	 AG	950-955	GT	AGG
(CAA)	 AG	982-987	GT	AGG
(AAA)	 AG	1010-1015	GT	AGG
(CGA)	 AG	1036-1059	GT	AGG
(AGA)	 AG	1086-1091	GT	AGG
(CGA)	 AG	1116-1121	GT	AGG
(CAA)	 AG	1146-1151	GT	AGG
(AGA)	 AG	1174-1182	GT	GAG
(AGA)	 AG	1207-1236	GT	AGG
(AGA)	 AG	1263-1280	GT	AGG
(AGG)	 AG	1307-1318	GT	AGG
(AGA)	 AG	1343-1366	GT	AGG
(AGC)	 AG	1401-1451	GT	GGG
-recovered GeneMark_model.110069_t, internal, 35, 81
-recovered GeneMark_model.110069_t, internal, 275, 280
-recovered GeneMark_model.110069_t, internal, 454, 529
-recovered GeneMark_model.110069_t, internal, 749, 760
-recovered GeneMark_model.110069_t, internal, 781, 816
-recovered GeneMark_model.110069_t, internal, 844, 849
-recovered GeneMark_model.110069_t, internal, 872, 877
-recovered GeneMark_model.110069_t, internal, 902, 925
-recovered GeneMark_model.110069_t, internal, 950, 955
-recovered GeneMark_model.110069_t, internal, 982, 987
-recovered GeneMark_model.110069_t, internal, 1010, 1015
-recovered GeneMark_model.110069_t, internal, 1036, 1059
-recovered GeneMark_model.110069_t, internal, 1086, 1091
-recovered GeneMark_model.110069_t, internal, 1116, 1121
-recovered GeneMark_model.110069_t, internal, 1146, 1151
-recovered GeneMark_model.110069_t, internal, 1174, 1182
-recovered GeneMark_model.110069_t, internal, 1207, 1236
-recovered GeneMark_model.110069_t, internal, 1263, 1280
-recovered GeneMark_model.110069_t, internal, 1307, 1318
-recovered GeneMark_model.110069_t, internal, 1343, 1366
-recovered GeneMark_model.110069_t, internal, 1401, 1451
Couldn't classify 454, 529
Sorry, prediction GlimmerHMM_glimmerT_62995-T1 fails validation.
(AGA)	 AG	454-529	GT	AGG
(GTG)	 AG	696-764	AG	AGA
-recovered GlimmerHMM_glimmerT_62995-T1, terminal, 696, 764
-recovered GlimmerHMM_glimmerT_62995-T1, internal, 454, 529

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1549
-exon list size: 49


building trellis

2.0    
3.9    
5.9    
7.8    
9.8    
11.8    
13.7    
15.7    
17.6    
19.6    
21.6    
23.5    
25.5    
27.5    
29.4    
31.4    
33.3    
35.3    
37.3    
39.2    
41.2    
43.1    
45.1    
47.1    
49.0    
51.0    
52.9    
54.9    
56.9    
58.8    
60.8    
62.7    
64.7    
66.7    
68.6    
70.6    
72.5    
74.5    
76.5    
78.4    
80.4    
82.4    
84.3    
86.3    
88.2    
90.2    
92.2    
94.1    
96.1    
98.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support