-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_214

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61518-T1
Valid prediction for GlimmerHMM_glimmerT_61519-T1
Couldn't classify 946, 1102
Sorry, prediction snap_scaffold_214-snap.2-T1 fails validation.
(GTC)	 AG	946-1102	GT	AGG
(GGC)	 AG	1741-1818	GT	GGG
(GTG)	 AG	2889-2996	GT	AGG
(GAG)	 AG	4095-4175	GT	AGG
(GAG)	 AG	4261-4446	AC	AGA
-recovered snap_scaffold_214-snap.2-T1, terminal, 4261, 4446
-recovered snap_scaffold_214-snap.2-T1, internal, 946, 1102
-recovered snap_scaffold_214-snap.2-T1, internal, 1741, 1818
-recovered snap_scaffold_214-snap.2-T1, internal, 2889, 2996
-recovered snap_scaffold_214-snap.2-T1, internal, 4095, 4175
Valid prediction for GeneMark_model.106959_t
Couldn't classify 946, 1102
Sorry, prediction Augustus_model.g40912.t1 fails validation.
(GTC)	 AG	946-1102	GT	AGG
(GTG)	 AG	2889-2996	GT	AGG
(GAG)	 AG	4095-4175	GT	AGG
(GAG)	 AG	4261-4446	AC	AGA
-recovered Augustus_model.g40912.t1, terminal, 4261, 4446
-recovered Augustus_model.g40912.t1, internal, 946, 1102
-recovered Augustus_model.g40912.t1, internal, 2889, 2996
-recovered Augustus_model.g40912.t1, internal, 4095, 4175
Valid prediction for snap_scaffold_214-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 8446, 8575
Sorry, prediction snap_scaffold_214-snap.1-T1 fails validation.
(ATG)	 CA	3754-3776	GT	ACG
(ACG)	 AG	5167-5271	GT	GGG
(CTT)	 AG	5392-5495	GT	AGG
(AGG)	 AG	7784-8034	GT	TAG
(GCT)	 AG	8446-8575	GT	GCG
-recovered snap_scaffold_214-snap.1-T1, initial, 3754, 3776
-recovered snap_scaffold_214-snap.1-T1, internal, 5167, 5271
-recovered snap_scaffold_214-snap.1-T1, internal, 5392, 5495
-recovered snap_scaffold_214-snap.1-T1, internal, 7784, 8034
-recovered snap_scaffold_214-snap.1-T1, internal, 8446, 8575
Valid prediction for GeneMark_model.106960_t
Valid prediction for snap_scaffold_214-snap.4-T1
Valid prediction for GlimmerHMM_glimmerT_61520-T1
Couldn't classify 8446, 8575
Sorry, prediction GeneMark_model.106958_t fails validation.
(ATG)	 CC	7496-7605	GT	CAG
(AGC)	 AG	7744-7803	GT	AGG
(AGG)	 AG	7827-8034	GT	TAG
(GCT)	 AG	8446-8575	GT	GCG
-recovered GeneMark_model.106958_t, initial, 7496, 7605
-recovered GeneMark_model.106958_t, internal, 7744, 7803
-recovered GeneMark_model.106958_t, internal, 7827, 8034
-recovered GeneMark_model.106958_t, internal, 8446, 8575
Valid prediction for Augustus_model.g40913.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5760, rend_intergenic: 946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9513
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 5760, rend_intergenic: 946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support