-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2137

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 70, 192
Couldn't classify 1083, 1148
Sorry, prediction snap_scaffold_2137-snap.1-T1 fails validation.
(AGA)	 AG	70-192	GT	CAG
(AAA)	 AG	1083-1148	GT	AAG
-recovered snap_scaffold_2137-snap.1-T1, internal, 70, 192
-recovered snap_scaffold_2137-snap.1-T1, internal, 1083, 1148

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 29, 40
Couldn't classify 485, 639
Sorry, prediction GeneMark_model.110066_t fails validation.
(TGG)	 AG	29-40	GT	CAG
(GAG)	 AG	61-109	GT	CGG
(GAG)	 AG	485-639	GT	AGG
-recovered GeneMark_model.110066_t, internal, 29, 40
-recovered GeneMark_model.110066_t, internal, 61, 109
-recovered GeneMark_model.110066_t, internal, 485, 639
Valid prediction for GlimmerHMM_glimmerT_62994-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1551
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support