-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2135

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 12, 43
Couldn't classify 1489, 1529
Sorry, prediction GeneMark_model.110064_t fails validation.
(GAG)	 AG	12-43	GT	GGG
(GAG)	 AG	72-83	GT	GGG
(GAG)	 AG	112-175	GT	GGG
(GGG)	 AG	337-359	GT	GGG
(GCC)	 AG	407-472	GT	GAG
(ATC)	 AG	1251-1459	GT	TGG
(CCT)	 AG	1489-1529	GC	CAG
-recovered GeneMark_model.110064_t, internal, 12, 43
-recovered GeneMark_model.110064_t, internal, 72, 83
-recovered GeneMark_model.110064_t, internal, 112, 175
-recovered GeneMark_model.110064_t, internal, 337, 359
-recovered GeneMark_model.110064_t, internal, 407, 472
-recovered GeneMark_model.110064_t, internal, 1251, 1459
-recovered GeneMark_model.110064_t, internal, 1489, 1529
Couldn't classify 882, 957
Sorry, prediction snap_scaffold_2135-snap.1-T1 fails validation.
(GGT)	 AG	882-957	GT	GGG
(CCC)	 AG	1359-1495	CC	AAC
-recovered snap_scaffold_2135-snap.1-T1, terminal, 1359, 1495
-recovered snap_scaffold_2135-snap.1-T1, internal, 882, 957
Couldn't classify 882, 957
Couldn't classify 1223, 1369
Sorry, prediction Augustus_model.g41968.t1 fails validation.
(GGT)	 AG	882-957	GT	GGG
(AGA)	 AG	1223-1369	GC	AGG
-recovered Augustus_model.g41968.t1, internal, 882, 957
-recovered Augustus_model.g41968.t1, internal, 1223, 1369

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1552
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support