-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2131

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 158, 267
Sorry, prediction Augustus_model.g41966.t1 fails validation.
(GCA)	 AG	158-267	GT	AGG
(ATC)	 AG	359-438	GT	TGG
(TCA)	 AG	1216-1279	AG	AGA
-recovered Augustus_model.g41966.t1, terminal, 1216, 1279
-recovered Augustus_model.g41966.t1, internal, 158, 267
-recovered Augustus_model.g41966.t1, internal, 359, 438

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 524, 1128
Sorry, prediction GeneMark_model.110062_t fails validation.
(AGC)	 AG	524-1128	GT	GTG
-recovered GeneMark_model.110062_t, internal, 524, 1128
Valid prediction for GlimmerHMM_glimmerT_62992-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62992-T1 524-1287-terminal-1 is invalid.
Valid prediction for snap_scaffold_2131-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1555
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support