-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2130

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 428, 450
Couldn't classify 930, 965
Sorry, prediction GeneMark_model.110061_t fails validation.
(CCC)	 AG	428-450	GT	GAG
(GTT)	 AG	651-660	GT	GGG
(GGA)	 AG	701-871	GT	AGG
(GAG)	 AG	894-905	GT	AGG
(AGA)	 AG	930-965	GT	GGG
-recovered GeneMark_model.110061_t, internal, 428, 450
-recovered GeneMark_model.110061_t, internal, 651, 660
-recovered GeneMark_model.110061_t, internal, 701, 871
-recovered GeneMark_model.110061_t, internal, 894, 905
-recovered GeneMark_model.110061_t, internal, 930, 965

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1156, 1271
Sorry, prediction Augustus_model.g41965.t1 fails validation.
(ATG)	 AG	141-186	GT	CGG
(GGT)	 AG	469-512	GT	AGG
(ATC)	 AG	762-939	GT	GAG
(TGC)	 AG	1156-1271	GT	AGG
-recovered Augustus_model.g41965.t1, initial, 141, 186
-recovered Augustus_model.g41965.t1, internal, 141, 186
-recovered Augustus_model.g41965.t1, internal, 469, 512
-recovered Augustus_model.g41965.t1, internal, 762, 939
-recovered Augustus_model.g41965.t1, internal, 1156, 1271
Couldn't classify 469, 512
Couldn't classify 1156, 1271
Sorry, prediction snap_scaffold_2130-snap.1-T1 fails validation.
(GGT)	 AG	469-512	GT	AGG
(ATC)	 AG	762-939	GT	GAG
(TGC)	 AG	1156-1271	GT	AGG
-recovered snap_scaffold_2130-snap.1-T1, internal, 469, 512
-recovered snap_scaffold_2130-snap.1-T1, internal, 762, 939
-recovered snap_scaffold_2130-snap.1-T1, internal, 1156, 1271

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1558
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support