-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_213 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 1045, 1072 Couldn't classify 9205, 9415 Sorry, prediction snap_scaffold_213-snap.1-T1 fails validation. (GTC) AG 1045-1072 GT TGG (TGG) AG 1449-1555 GT GTG (AGG) AG 4013-4170 GT AGG (GTG) AG 7621-7627 GT GTG (CTC) AG 9024-9152 GT CGG (AGT) AG 9205-9415 GT AGG -recovered snap_scaffold_213-snap.1-T1, internal, 1045, 1072 -recovered snap_scaffold_213-snap.1-T1, internal, 1449, 1555 -recovered snap_scaffold_213-snap.1-T1, internal, 4013, 4170 -recovered snap_scaffold_213-snap.1-T1, internal, 7621, 7627 -recovered snap_scaffold_213-snap.1-T1, internal, 9024, 9152 -recovered snap_scaffold_213-snap.1-T1, internal, 9205, 9415 Couldn't classify 250, 294 Sorry, prediction GeneMark_model.106955_t fails validation. (TGT) AG 250-294 GT ATG (GGA) AG 803-823 GT GGG (GGA) AG 845-865 GT GGG (AGG) AG 891-1016 GT CTG (GTC) AG 1045-1072 GT TGG (GCC) AG 1455-1555 GT GTG (GAA) AG 1600-1641 GC GAG (GAG) AG 1677-1820 GT GAG (AGA) AG 1879-1971 GT GAG (AGA) AG 1995-2165 GT GGG (TAG) AG 2197-2256 GT GTG (AGC) AG 2281-2298 GT ATG (AAA) AG 2436-2468 GT GAG (AGA) AG 2492-2524 GC AAG (AGA) AG 2548-2586 GT GAG (AAA) AG 2742-2829 GG GAG -recovered GeneMark_model.106955_t, terminal, 2742, 2829 -recovered GeneMark_model.106955_t, internal, 250, 294 -recovered GeneMark_model.106955_t, internal, 803, 823 -recovered GeneMark_model.106955_t, internal, 845, 865 -recovered GeneMark_model.106955_t, internal, 891, 1016 -recovered GeneMark_model.106955_t, internal, 1045, 1072 -recovered GeneMark_model.106955_t, internal, 1455, 1555 -recovered GeneMark_model.106955_t, internal, 1600, 1641 -recovered GeneMark_model.106955_t, internal, 1677, 1820 -recovered GeneMark_model.106955_t, internal, 1879, 1971 -recovered GeneMark_model.106955_t, internal, 1995, 2165 -recovered GeneMark_model.106955_t, internal, 2197, 2256 -recovered GeneMark_model.106955_t, internal, 2281, 2298 -recovered GeneMark_model.106955_t, internal, 2436, 2468 -recovered GeneMark_model.106955_t, internal, 2492, 2524 -recovered GeneMark_model.106955_t, internal, 2548, 2586 Couldn't classify 9413, 9487 Sorry, prediction GeneMark_model.106957_t fails validation. (ATG) TT 3652-3657 GT GCG (AAA) AG 3749-3906 GT AGG (GGA) AG 4035-4170 GT AGG (AGA) AG 4645-4652 GT GAG (GGT) AG 4785-4886 GT GGG (GGG) AG 4971-5063 GT GAG (TGT) AG 5687-5934 GT TGG (GTT) AG 6108-6162 GT GAG (GAG) AG 6185-6220 GT AGG (TGG) AG 6253-6273 GT GCG (AGA) AG 6918-6953 GT AGG (AGA) AG 7753-7800 GT AAG (AGG) AG 7833-7886 GT AGG (TTG) AG 7918-7927 GT AAG (CGA) AG 9123-9205 GT GAG (TTG) AG 9223-9390 GT CAG (GAG) AG 9413-9487 GC AGG -recovered GeneMark_model.106957_t, initial, 3652, 3657 -recovered GeneMark_model.106957_t, internal, 3749, 3906 -recovered GeneMark_model.106957_t, internal, 4035, 4170 -recovered GeneMark_model.106957_t, internal, 4645, 4652 -recovered GeneMark_model.106957_t, internal, 4785, 4886 -recovered GeneMark_model.106957_t, internal, 4971, 5063 -recovered GeneMark_model.106957_t, internal, 5687, 5934 -recovered GeneMark_model.106957_t, internal, 6108, 6162 -recovered GeneMark_model.106957_t, internal, 6185, 6220 -recovered GeneMark_model.106957_t, internal, 6253, 6273 -recovered GeneMark_model.106957_t, internal, 6918, 6953 -recovered GeneMark_model.106957_t, internal, 7753, 7800 -recovered GeneMark_model.106957_t, internal, 7833, 7886 -recovered GeneMark_model.106957_t, internal, 7918, 7927 -recovered GeneMark_model.106957_t, internal, 9123, 9205 -recovered GeneMark_model.106957_t, internal, 9223, 9390 -recovered GeneMark_model.106957_t, internal, 9413, 9487 Couldn't classify 1045, 1072 Sorry, prediction Augustus_model.g40911.t1 fails validation. (GTC) AG 1045-1072 GT TGG (TGG) AG 1449-1559 AT AAA -recovered Augustus_model.g40911.t1, terminal, 1449, 1559 -recovered Augustus_model.g40911.t1, internal, 1045, 1072 Valid prediction for GlimmerHMM_glimmerT_61517-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106956_t Valid prediction for GlimmerHMM_glimmerT_61516-T1 Couldn't classify 482, 605 Sorry, prediction snap_scaffold_213-snap.2-T1 fails validation. (TGA) AG 482-605 GT ACG (AGA) AG 2071-2101 GT AAG (GAA) AG 6805-6870 GT AGG (GTA) AG 7970-8070 GG AGG -recovered snap_scaffold_213-snap.2-T1, terminal, 7970, 8070 -recovered snap_scaffold_213-snap.2-T1, internal, 482, 605 -recovered snap_scaffold_213-snap.2-T1, internal, 2071, 2101 -recovered snap_scaffold_213-snap.2-T1, internal, 6805, 6870 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9415, rend_intergenic: 1445 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 9514 -exon list size: 89 building trellis 1.1 2.2 3.3 4.4 5.5 6.6 7.7 8.8 9.9 11.0 12.1 13.2 14.3 15.4 16.5 17.6 18.7 19.8 20.9 22.0 23.1 24.2 25.3 26.4 27.5 28.6 29.7 30.8 31.9 33.0 34.1 35.2 36.3 37.4 38.5 39.6 40.7 41.8 42.9 44.0 45.1 46.2 47.3 48.4 49.5 50.5 51.6 52.7 53.8 54.9 56.0 57.1 58.2 59.3 60.4 61.5 62.6 63.7 64.8 65.9 67.0 68.1 69.2 70.3 71.4 72.5 73.6 74.7 75.8 76.9 78.0 79.1 80.2 81.3 82.4 83.5 84.6 85.7 86.8 87.9 89.0 90.1 91.2 92.3 93.4 94.5 95.6 96.7 97.8 98.9 -found 4 predictions from path traversal Error with prediction: snap lend_intergenic: 9415, rend_intergenic: 1445 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support