-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2129

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 68, 456
Couldn't classify 482, 496
Sorry, prediction GeneMark_model.110060_t fails validation.
(GGA)	 AG	68-456	GT	GTG
(AGG)	 AG	482-496	GT	GAG
-recovered GeneMark_model.110060_t, internal, 68, 456
-recovered GeneMark_model.110060_t, internal, 482, 496
Couldn't classify 68, 456
Sorry, prediction snap_scaffold_2129-snap.1-T1 fails validation.
(GGA)	 AG	68-456	GT	GTG
-recovered snap_scaffold_2129-snap.1-T1, internal, 68, 456
Valid prediction for GlimmerHMM_glimmerT_62991-T1
Valid prediction for pasa_asmbl_29055.p1
Valid prediction for Augustus_model.g41964.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1558
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support