-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2124

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 49, 216
Couldn't classify 1452, 1534
Sorry, prediction GeneMark_model.110058_t fails validation.
(AGG)	 AG	49-216	GT	ATG
(GGA)	 AG	241-432	GC	AGG
(AGA)	 AG	455-719	GT	CAG
(GGG)	 AG	797-852	GT	AGG
(GAT)	 AG	883-909	GT	AGG
(CGA)	 AG	933-1037	GT	GTG
(AGA)	 AG	1452-1534	GC	AAG
-recovered GeneMark_model.110058_t, internal, 49, 216
-recovered GeneMark_model.110058_t, internal, 241, 432
-recovered GeneMark_model.110058_t, internal, 455, 719
-recovered GeneMark_model.110058_t, internal, 797, 852
-recovered GeneMark_model.110058_t, internal, 883, 909
-recovered GeneMark_model.110058_t, internal, 933, 1037
-recovered GeneMark_model.110058_t, internal, 1452, 1534
Valid prediction for snap_scaffold_2124-snap.1-T1
add_exon() Sorry, snap_scaffold_2124-snap.1-T1 849-1098-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_62988-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1562
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support