-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2123

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 119, 126
Sorry, prediction GeneMark_model.110057_t fails validation.
(GGA)	 AG	119-126	GT	CTG
(CTG)	 AG	177-201	GT	TGG
(GGA)	 AG	244-381	GT	GAG
(TGA)	 AG	407-442	GT	GAG
(AAA)	 AG	470-514	GT	GTG
(AAG)	 AG	540-578	GT	GAG
(AGA)	 AG	606-614	GT	GAG
(GGA)	 AG	638-680	GA	AGG
-recovered GeneMark_model.110057_t, terminal, 638, 680
-recovered GeneMark_model.110057_t, internal, 119, 126
-recovered GeneMark_model.110057_t, internal, 177, 201
-recovered GeneMark_model.110057_t, internal, 244, 381
-recovered GeneMark_model.110057_t, internal, 407, 442
-recovered GeneMark_model.110057_t, internal, 470, 514
-recovered GeneMark_model.110057_t, internal, 540, 578
-recovered GeneMark_model.110057_t, internal, 606, 614

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1563
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support