-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2122

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62987-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62987-T1 607-767-terminal-1 is invalid.
Couldn't classify 32, 50
Couldn't classify 881, 958
Sorry, prediction GeneMark_model.110056_t fails validation.
(TTT)	 AG	32-50	GT	CTG
(AGT)	 AG	621-742	GT	TGG
(GCT)	 AG	768-842	GT	TTG
(CGC)	 AG	881-958	GT	AAG
-recovered GeneMark_model.110056_t, internal, 32, 50
-recovered GeneMark_model.110056_t, internal, 621, 742
-recovered GeneMark_model.110056_t, internal, 768, 842
-recovered GeneMark_model.110056_t, internal, 881, 958

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1563
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support