-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2121

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 230, 488
Couldn't classify 1382, 1477
Sorry, prediction Augustus_model.g41963.t1 fails validation.
(GAT)	 AG	230-488	GT	AGG
(GAC)	 AG	1047-1204	GT	AGG
(AGA)	 AG	1382-1477	GT	CTG
-recovered Augustus_model.g41963.t1, internal, 230, 488
-recovered Augustus_model.g41963.t1, internal, 1047, 1204
-recovered Augustus_model.g41963.t1, internal, 1382, 1477
Couldn't classify 273, 515
Sorry, prediction GlimmerHMM_glimmerT_62986-T1 fails validation.
(GTG)	 AG	273-515	GT	AGG
(GAC)	 AG	1047-1208	GG	GAG
-recovered GlimmerHMM_glimmerT_62986-T1, terminal, 1047, 1208
-recovered GlimmerHMM_glimmerT_62986-T1, internal, 273, 515
Couldn't classify 273, 488
Couldn't classify 1047, 1204
Sorry, prediction GeneMark_model.110055_t fails validation.
(GTG)	 AG	273-488	GT	AGG
(GAC)	 AG	1047-1204	GT	AGG
-recovered GeneMark_model.110055_t, internal, 273, 488
-recovered GeneMark_model.110055_t, internal, 1047, 1204
Couldn't classify 273, 488
Couldn't classify 1047, 1204
Sorry, prediction snap_scaffold_2121-snap.1-T1 fails validation.
(GTG)	 AG	273-488	GT	AGG
(GAC)	 AG	1047-1204	GT	AGG
-recovered snap_scaffold_2121-snap.1-T1, internal, 273, 488
-recovered snap_scaffold_2121-snap.1-T1, internal, 1047, 1204

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1564
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support