-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2120

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1222, 1564
Sorry, prediction GlimmerHMM_glimmerT_62985-T1 fails validation.
(ATG)	 AC	1222-1564		GG
Couldn't classify 1073, 1559
Sorry, prediction snap_scaffold_2120-snap.1-T1 fails validation.
(ATG)	 GC	515-739	GT	AAG
(CAA)	 AG	1073-1559	GT	GAG
-recovered snap_scaffold_2120-snap.1-T1, initial, 515, 739
-recovered snap_scaffold_2120-snap.1-T1, internal, 1073, 1559

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1178, 1273
Sorry, prediction Augustus_model.g41962.t1 fails validation.
(ATG)	 CC	606-695	GT	AAG
(CCC)	 AG	1178-1273	GT	TGG
-recovered Augustus_model.g41962.t1, initial, 606, 695
-recovered Augustus_model.g41962.t1, internal, 1178, 1273
Couldn't classify 81, 224
Couldn't classify 1396, 1548
Sorry, prediction GeneMark_model.110054_t fails validation.
(CCT)	 AG	81-224	GT	TAG
(CCT)	 AG	291-392	GT	CTG
(CCC)	 AG	1178-1269	GT	CAG
(AGG)	 AG	1396-1548	GC	ACG
-recovered GeneMark_model.110054_t, internal, 81, 224
-recovered GeneMark_model.110054_t, internal, 291, 392
-recovered GeneMark_model.110054_t, internal, 1178, 1269
-recovered GeneMark_model.110054_t, internal, 1396, 1548

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1564
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support