-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2119

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2119-snap.1-T1
add_exon() Sorry, snap_scaffold_2119-snap.1-T1 809-1061-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 531, 623
Sorry, prediction GeneMark_model.110053_t fails validation.
(CCC)	 AG	531-623	GT	AAG
(TGT)	 AG	669-684	GT	AGG
(AAC)	 AG	809-885	GT	CAG
(GAA)	 AG	1136-1151	AA	AAA
-recovered GeneMark_model.110053_t, terminal, 1136, 1151
-recovered GeneMark_model.110053_t, internal, 531, 623
-recovered GeneMark_model.110053_t, internal, 669, 684
-recovered GeneMark_model.110053_t, internal, 809, 885

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1564
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support