-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2118

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 360, 500
Sorry, prediction GeneMark_model.110051_t fails validation.
(GAG)	 AG	360-500	GC	ATG
(AGG)	 AG	521-566	GA	GAG
-recovered GeneMark_model.110051_t, terminal, 521, 566
-recovered GeneMark_model.110051_t, internal, 360, 500
Valid prediction for snap_scaffold_2118-snap.1-T1
Couldn't classify 1498, 1507
Sorry, prediction GeneMark_model.110052_t fails validation.
(ATG)	 AG	631-812	GT	AGG
(GAG)	 AG	841-855	GT	CAG
(AGG)	 AG	894-902	GT	AGG
(GGA)	 AG	930-962	GT	GGG
(GGT)	 AG	984-1028	GT	GGG
(GGT)	 AG	1498-1507	GT	TGG
-recovered GeneMark_model.110052_t, initial, 631, 812
-recovered GeneMark_model.110052_t, internal, 631, 812
-recovered GeneMark_model.110052_t, internal, 841, 855
-recovered GeneMark_model.110052_t, internal, 894, 902
-recovered GeneMark_model.110052_t, internal, 930, 962
-recovered GeneMark_model.110052_t, internal, 984, 1028
-recovered GeneMark_model.110052_t, internal, 1498, 1507

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1567
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support