-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2116

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 60, 131
Sorry, prediction GeneMark_model.110050_t fails validation.
(GAC)	 AG	60-131	GT	AGG
(ACA)	 AG	172-237	GT	AGG
(TGG)	 AG	260-301	GT	AGG
(ACA)	 AG	326-349	GT	AGG
(AGA)	 AG	372-377	GT	AGG
(ACA)	 AG	402-413	GT	AGG
(GGA)	 AG	747-794	GT	GAG
(AGG)	 AG	1237-1311	GT	AGG
(AGA)	 AG	1443-1499	GT	GGG
(AGA)	 AG	1524-1554	GG	GAG
-recovered GeneMark_model.110050_t, terminal, 1524, 1554
-recovered GeneMark_model.110050_t, internal, 60, 131
-recovered GeneMark_model.110050_t, internal, 172, 237
-recovered GeneMark_model.110050_t, internal, 260, 301
-recovered GeneMark_model.110050_t, internal, 326, 349
-recovered GeneMark_model.110050_t, internal, 372, 377
-recovered GeneMark_model.110050_t, internal, 402, 413
-recovered GeneMark_model.110050_t, internal, 747, 794
-recovered GeneMark_model.110050_t, internal, 1237, 1311
-recovered GeneMark_model.110050_t, internal, 1443, 1499

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1570
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support