-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2114

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1217, 1561
Sorry, prediction snap_scaffold_2114-snap.1-T1 fails validation.
(AGG)	 AG	1217-1561	GT	AAG
-recovered snap_scaffold_2114-snap.1-T1, internal, 1217, 1561
Couldn't classify 13, 46
Couldn't classify 1538, 1561
Sorry, prediction GeneMark_model.110048_t fails validation.
(GGG)	 AG	13-46	GT	GAG
(ATG)	 AG	99-152	GT	ATG
(GCA)	 AG	760-774	GT	AGG
(AAG)	 AG	798-890	GT	AGG
(AGG)	 AG	924-1172	GT	AAG
(AAG)	 AG	1197-1202	GT	GAG
(GAG)	 AG	1225-1251	GT	AAG
(AGG)	 AG	1273-1296	GT	AAG
(GAG)	 AG	1320-1331	GT	AAG
(AGC)	 AG	1353-1361	GT	AAG
(AGG)	 AG	1388-1396	GT	AAG
(GAG)	 AG	1420-1431	GT	AAG
(CAG)	 AG	1455-1481	GT	AAG
(GAG)	 AG	1505-1516	GT	AAG
(AGG)	 AG	1538-1561	GT	AAG
add_exon() Sorry, GeneMark_model.110048_t 99-152-initial-1 is invalid.
-recovered GeneMark_model.110048_t, initial, 99, 152
-recovered GeneMark_model.110048_t, internal, 13, 46
-recovered GeneMark_model.110048_t, internal, 99, 152
-recovered GeneMark_model.110048_t, internal, 760, 774
-recovered GeneMark_model.110048_t, internal, 798, 890
-recovered GeneMark_model.110048_t, internal, 924, 1172
-recovered GeneMark_model.110048_t, internal, 1197, 1202
-recovered GeneMark_model.110048_t, internal, 1225, 1251
-recovered GeneMark_model.110048_t, internal, 1273, 1296
-recovered GeneMark_model.110048_t, internal, 1320, 1331
-recovered GeneMark_model.110048_t, internal, 1353, 1361
-recovered GeneMark_model.110048_t, internal, 1388, 1396
-recovered GeneMark_model.110048_t, internal, 1420, 1431
-recovered GeneMark_model.110048_t, internal, 1455, 1481
-recovered GeneMark_model.110048_t, internal, 1505, 1516
-recovered GeneMark_model.110048_t, internal, 1538, 1561

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1570
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support