-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2113

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2113-snap.1-T1
Couldn't classify 490, 495
Sorry, prediction GeneMark_model.110046_t fails validation.
(CAG)	 AG	490-495	GT	CAG
(AGG)	 AG	550-585	GT	GAG
(GAT)	 AG	686-706	GT	ATG
(AGA)	 AG	764-799	GC	AGG
(AGA)	 AG	824-862	GT	GAG
(AGA)	 AG	962-977	TG	AGT
-recovered GeneMark_model.110046_t, terminal, 962, 977
-recovered GeneMark_model.110046_t, internal, 490, 495
-recovered GeneMark_model.110046_t, internal, 550, 585
-recovered GeneMark_model.110046_t, internal, 686, 706
-recovered GeneMark_model.110046_t, internal, 764, 799
-recovered GeneMark_model.110046_t, internal, 824, 862

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62984-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62984-T1 92-279-terminal-1 is invalid.
Valid prediction for GeneMark_model.110047_t
add_exon() Sorry, GeneMark_model.110047_t 92-279-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1571
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support