-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2112

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 577, 735
Couldn't classify 1402, 1468
Sorry, prediction pasa_asmbl_29051.p2 fails validation.
(GTG)	 CA	577-735	GT	AGG
(GAG)	 AG	1024-1106	GT	TCG
(AGC)	 AG	1402-1468	CC	ACC
-recovered pasa_asmbl_29051.p2, internal, 1024, 1106
Couldn't classify 578, 735
Couldn't classify 1402, 1486
Sorry, prediction Augustus_model.g41961.t1 fails validation.
(TGG)	 AG	578-735	GT	AGG
(GAG)	 AG	1024-1106	GT	TCG
(AGC)	 AG	1402-1486	GT	CGG
-recovered Augustus_model.g41961.t1, internal, 578, 735
-recovered Augustus_model.g41961.t1, internal, 1024, 1106
-recovered Augustus_model.g41961.t1, internal, 1402, 1486
Valid prediction for GlimmerHMM_glimmerT_62983-T1
Couldn't classify 578, 735
Couldn't classify 1402, 1486
Sorry, prediction snap_scaffold_2112-snap.1-T1 fails validation.
(TGG)	 AG	578-735	GT	AGG
(GAG)	 AG	1024-1106	GT	TCG
(AGC)	 AG	1402-1486	GT	CGG
-recovered snap_scaffold_2112-snap.1-T1, internal, 578, 735
-recovered snap_scaffold_2112-snap.1-T1, internal, 1024, 1106
-recovered snap_scaffold_2112-snap.1-T1, internal, 1402, 1486

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 192, 204
Sorry, prediction GeneMark_model.110045_t fails validation.
(GTG)	 AG	192-204	GT	ATG
(GAT)	 AG	494-672	GC	AAG
(GGG)	 AG	708-746	GT	GAG
-recovered GeneMark_model.110045_t, terminal, 708, 746
-recovered GeneMark_model.110045_t, internal, 192, 204
-recovered GeneMark_model.110045_t, internal, 494, 672
-recovered GeneMark_model.110045_t, internal, 708, 746

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1573
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support