-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2110

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41960.t1
Valid prediction for GlimmerHMM_glimmerT_62981-T1
Valid prediction for GlimmerHMM_glimmerT_62982-T1
Couldn't classify 745, 947
Couldn't classify 1169, 1285
Sorry, prediction GeneMark_model.110044_t fails validation.
(ATC)	 AG	745-947	GT	TTG
(ACC)	 AG	1169-1285	GT	AGG
-recovered GeneMark_model.110044_t, internal, 745, 947
-recovered GeneMark_model.110044_t, internal, 1169, 1285

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1574
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support