-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_211

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_211-snap.2-T1
Couldn't classify 352, 472
Sorry, prediction GeneMark_model.106948_t fails validation.
(AGA)	 AG	352-472	GT	TGG
(AGA)	 AG	510-643	GT	TGG
(CTA)	 AG	665-668	AG	AAA
-recovered GeneMark_model.106948_t, terminal, 665, 668
-recovered GeneMark_model.106948_t, internal, 352, 472
-recovered GeneMark_model.106948_t, internal, 510, 643
Valid prediction for GeneMark_model.106949_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2691, 2818
Sorry, prediction snap_scaffold_211-snap.1-T1 fails validation.
(GGA)	 AG	2691-2818	GT	GGG
(TGG)	 AG	3976-4070	GT	AGG
(GCC)	 AG	6699-6870	GT	ACG
(GAG)	 AG	7143-7224	GT	ATG
(TCA)	 AG	9273-9286	AA	AAA
-recovered snap_scaffold_211-snap.1-T1, terminal, 9273, 9286
-recovered snap_scaffold_211-snap.1-T1, internal, 2691, 2818
-recovered snap_scaffold_211-snap.1-T1, internal, 3976, 4070
-recovered snap_scaffold_211-snap.1-T1, internal, 6699, 6870
-recovered snap_scaffold_211-snap.1-T1, internal, 7143, 7224
Valid prediction for GlimmerHMM_glimmerT_61513-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6906, rend_intergenic: 315  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9596
-exon list size: 38


building trellis

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-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6906, rend_intergenic: 315  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support