-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2109

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 160, 225
Sorry, prediction GeneMark_model.110042_t fails validation.
(GTC)	 AG	160-225	GT	GAG
(CAA)	 AG	302-392	TT	AAT
-recovered GeneMark_model.110042_t, terminal, 302, 392
-recovered GeneMark_model.110042_t, internal, 160, 225
Couldn't classify 160, 225
Couldn't classify 1393, 1500
Sorry, prediction Augustus_model.g41959.t1 fails validation.
(GTC)	 AG	160-225	GT	GAG
(GGG)	 AG	650-676	GT	AAG
(GGA)	 AG	1035-1083	GT	AGG
(GTC)	 AG	1393-1500	GT	TGG
-recovered Augustus_model.g41959.t1, terminal, 650, 676
-recovered Augustus_model.g41959.t1, internal, 160, 225
-recovered Augustus_model.g41959.t1, internal, 650, 676
-recovered Augustus_model.g41959.t1, internal, 1035, 1083
-recovered Augustus_model.g41959.t1, internal, 1393, 1500
Couldn't classify 160, 225
Couldn't classify 1393, 1500
Sorry, prediction snap_scaffold_2109-snap.1-T1 fails validation.
(GTC)	 AG	160-225	GT	GAG
(GGA)	 AG	1035-1083	GT	AGG
(GTC)	 AG	1393-1500	GT	TGG
-recovered snap_scaffold_2109-snap.1-T1, internal, 160, 225
-recovered snap_scaffold_2109-snap.1-T1, internal, 1035, 1083
-recovered snap_scaffold_2109-snap.1-T1, internal, 1393, 1500

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1116, 1318
Sorry, prediction snap_scaffold_2109-snap.2-T1 fails validation.
(GCG)	 AG	1116-1318	GT	ATG
-recovered snap_scaffold_2109-snap.2-T1, internal, 1116, 1318
Couldn't classify 33, 179
Sorry, prediction GeneMark_model.110043_t fails validation.
(GGG)	 AG	33-179	GT	GAG
(AGA)	 AG	952-961	TA	AGT
-recovered GeneMark_model.110043_t, terminal, 952, 961
-recovered GeneMark_model.110043_t, internal, 33, 179

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1500, rend_intergenic: 260  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1577
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1500, rend_intergenic: 260  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support