-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2108

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2108-snap.2-T1
Couldn't classify 1320, 1538
Sorry, prediction GeneMark_model.110041_t fails validation.
(ATG)	 GC	272-288	GT	GTG
(AGG)	 AG	313-382	GT	CAG
(AAG)	 AG	428-438	GT	ATG
(GCC)	 AG	838-864	GT	CTG
(AAC)	 AG	1320-1538	GC	CAG
-recovered GeneMark_model.110041_t, initial, 272, 288
-recovered GeneMark_model.110041_t, internal, 313, 382
-recovered GeneMark_model.110041_t, internal, 428, 438
-recovered GeneMark_model.110041_t, internal, 838, 864
-recovered GeneMark_model.110041_t, internal, 1320, 1538

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 680, 847
Couldn't classify 1381, 1436
Sorry, prediction snap_scaffold_2108-snap.1-T1 fails validation.
(GTC)	 AG	680-847	GT	CGG
(TCA)	 AG	1381-1436	GT	AGG
-recovered snap_scaffold_2108-snap.1-T1, internal, 680, 847
-recovered snap_scaffold_2108-snap.1-T1, internal, 1381, 1436

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1577
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support