-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2106

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 38, 123
Couldn't classify 928, 1043
Sorry, prediction GeneMark_model.110039_t fails validation.
(GTC)	 AG	38-123	GT	TCG
(AAG)	 AG	354-403	GT	AGG
(AGG)	 AG	500-674	GT	CGG
(TTC)	 AG	928-1043	GT	GGG
-recovered GeneMark_model.110039_t, internal, 38, 123
-recovered GeneMark_model.110039_t, internal, 354, 403
-recovered GeneMark_model.110039_t, internal, 500, 674
-recovered GeneMark_model.110039_t, internal, 928, 1043
Couldn't classify 38, 94
Sorry, prediction snap_scaffold_2106-snap.1-T1 fails validation.
(GTC)	 AG	38-94	GT	AGG
(GAG)	 AG	490-674	GT	CGG
(TTC)	 AG	928-1043	GT	GGG
(CGC)	 AG	1491-1501	GC	AAG
-recovered snap_scaffold_2106-snap.1-T1, terminal, 1491, 1501
-recovered snap_scaffold_2106-snap.1-T1, internal, 38, 94
-recovered snap_scaffold_2106-snap.1-T1, internal, 490, 674
-recovered snap_scaffold_2106-snap.1-T1, internal, 928, 1043
-recovered snap_scaffold_2106-snap.1-T1, internal, 1491, 1501

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1580
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support