-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2104

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62979-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62979-T1 1104-1323-terminal-1 is invalid.
Couldn't classify 1104, 1328
Sorry, prediction Augustus_model.g41958.t1 fails validation.
(ATG)	 TC	845-869	GT	TCG
(GTG)	 AG	1104-1328	GT	GGG
-recovered Augustus_model.g41958.t1, initial, 845, 869
-recovered Augustus_model.g41958.t1, internal, 1104, 1328
Couldn't classify 1104, 1328
Sorry, prediction GeneMark_model.110037_t fails validation.
(ATG)	 GA	456-744	GT	AGG
(GTG)	 AG	1104-1328	GT	GGG
-recovered GeneMark_model.110037_t, initial, 456, 744
-recovered GeneMark_model.110037_t, internal, 1104, 1328

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1582
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support