-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2102

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1404, 1584
Sorry, prediction Augustus_model.g41957.t1 fails validation.
(ATG)	 TG	465-576	GT	AGG
(GGT)	 AG	862-932	GT	CGG
(GGT)	 AG	1083-1271	GT	CGG
(CAC)	 AG	1404-1584		AC
-recovered Augustus_model.g41957.t1, initial, 465, 576
-recovered Augustus_model.g41957.t1, internal, 862, 932
-recovered Augustus_model.g41957.t1, internal, 1083, 1271
Couldn't classify 1425, 1575
Sorry, prediction GeneMark_model.110036_t fails validation.
(ATG)	 GG	435-437	GT	TGG
(GGA)	 AG	514-576	GT	AGG
(GTG)	 AG	682-699	GT	CTG
(GAC)	 AG	736-771	GT	AGG
(AAG)	 AG	885-932	GT	CGG
(GGC)	 AG	1119-1132	GT	GAG
(GGT)	 AG	1164-1271	GT	CGG
(GGT)	 AG	1425-1575	GT	AGG
-recovered GeneMark_model.110036_t, initial, 435, 437
-recovered GeneMark_model.110036_t, internal, 514, 576
-recovered GeneMark_model.110036_t, internal, 682, 699
-recovered GeneMark_model.110036_t, internal, 736, 771
-recovered GeneMark_model.110036_t, internal, 885, 932
-recovered GeneMark_model.110036_t, internal, 1119, 1132
-recovered GeneMark_model.110036_t, internal, 1164, 1271
-recovered GeneMark_model.110036_t, internal, 1425, 1575
Couldn't classify 189, 368
Couldn't classify 1444, 1575
Sorry, prediction snap_scaffold_2102-snap.1-T1 fails validation.
(GTG)	 AG	189-368	GT	ATG
(ATC)	 AG	475-576	GT	AGG
(GGT)	 AG	862-932	GT	CGG
(GGT)	 AG	1083-1271	GT	CGG
(GCC)	 AG	1444-1575	GT	AGG
-recovered snap_scaffold_2102-snap.1-T1, internal, 189, 368
-recovered snap_scaffold_2102-snap.1-T1, internal, 475, 576
-recovered snap_scaffold_2102-snap.1-T1, internal, 862, 932
-recovered snap_scaffold_2102-snap.1-T1, internal, 1083, 1271
-recovered snap_scaffold_2102-snap.1-T1, internal, 1444, 1575
Couldn't classify 1, 386
Sorry, prediction Augustus_model.g41956.t1 fails validation.
(TCA)	 AC	1-386	CT	AAC
Couldn't classify 1404, 1461
Sorry, prediction GlimmerHMM_glimmerT_62978-T1 fails validation.
(ATG)	 TG	465-576	GT	AGG
(GTG)	 AG	682-771	GT	AGG
(GGT)	 AG	862-932	GT	CGG
(GGT)	 AG	1083-1271	GT	CGG
(CAC)	 AG	1404-1461	GT	AGG
-recovered GlimmerHMM_glimmerT_62978-T1, initial, 465, 576
-recovered GlimmerHMM_glimmerT_62978-T1, internal, 682, 771
-recovered GlimmerHMM_glimmerT_62978-T1, internal, 862, 932
-recovered GlimmerHMM_glimmerT_62978-T1, internal, 1083, 1271
-recovered GlimmerHMM_glimmerT_62978-T1, internal, 1404, 1461
Couldn't classify 1, 386
Sorry, prediction GlimmerHMM_glimmerT_62977-T1 fails validation.
(TCA)	 AC	1-386	CT	AAC

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1352, 1553
Sorry, prediction GeneMark_model.110035_t fails validation.
(ATG)	 AG	1187-1197	GT	GAG
(GGA)	 AG	1229-1301	GT	AGG
(GAT)	 AG	1352-1553	GT	TGG
-recovered GeneMark_model.110035_t, initial, 1187, 1197
-recovered GeneMark_model.110035_t, internal, 1187, 1197
-recovered GeneMark_model.110035_t, internal, 1229, 1301
-recovered GeneMark_model.110035_t, internal, 1352, 1553

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1584
-exon list size: 44


building trellis

2.2    
4.3    
6.5    
8.7    
10.9    
13.0    
15.2    
17.4    
19.6    
21.7    
23.9    
26.1    
28.3    
30.4    
32.6    
34.8    
37.0    
39.1    
41.3    
43.5    
45.7    
47.8    
50.0    
52.2    
54.3    
56.5    
58.7    
60.9    
63.0    
65.2    
67.4    
69.6    
71.7    
73.9    
76.1    
78.3    
80.4    
82.6    
84.8    
87.0    
89.1    
91.3    
93.5    
95.7    
97.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support