-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2100

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 32, 47
Couldn't classify 340, 378
Sorry, prediction GeneMark_model.110034_t fails validation.
(GGT)	 AG	32-47	GT	GGG
(GAG)	 AG	89-111	GT	AAG
(AGG)	 AG	152-160	GT	AGG
(AGG)	 AG	216-302	GT	GAG
(TGG)	 AG	340-378	GT	GAG
-recovered GeneMark_model.110034_t, internal, 32, 47
-recovered GeneMark_model.110034_t, internal, 89, 111
-recovered GeneMark_model.110034_t, internal, 152, 160
-recovered GeneMark_model.110034_t, internal, 216, 302
-recovered GeneMark_model.110034_t, internal, 340, 378

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1585
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support