-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_21/scaffold_21_9282403-9408767

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_21-snap.2028-T1
Valid prediction for GlimmerHMM_glimmerT_49581-T1
Valid prediction for Augustus_model.g33253.t1
Valid prediction for GlimmerHMM_glimmerT_49572-T1
Valid prediction for GeneMark_model.85788_t
Valid prediction for Augustus_model.g33261.t1
Valid prediction for GlimmerHMM_glimmerT_49570-T1
Valid prediction for GlimmerHMM_glimmerT_49567-T1
Valid prediction for snap_scaffold_21-snap.2011-T1
Valid prediction for snap_scaffold_21-snap.2034-T1
Valid prediction for Augustus_model.g33258.t1
Valid prediction for GeneMark_model.85782_t
Valid prediction for snap_scaffold_21-snap.2047-T1
Valid prediction for GeneMark_model.85795_t
Valid prediction for snap_scaffold_21-snap.2039-T1
Valid prediction for snap_scaffold_21-snap.2045-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_21-snap.2033-T1
Valid prediction for GeneMark_model.85789_t
Valid prediction for snap_scaffold_21-snap.2042-T1
Valid prediction for GeneMark_model.85815_t
Valid prediction for snap_scaffold_21-snap.2036-T1
Valid prediction for Augustus_model.g33255.t1
Valid prediction for GeneMark_model.85787_t
Valid prediction for snap_scaffold_21-snap.2030-T1
Valid prediction for snap_scaffold_21-snap.2020-T1
Valid prediction for GlimmerHMM_glimmerT_49568-T1
Valid prediction for GlimmerHMM_glimmerT_49574-T1
Valid prediction for snap_scaffold_21-snap.2044-T1
Valid prediction for GeneMark_model.85797_t
Valid prediction for GeneMark_model.85801_t
Valid prediction for GeneMark_model.85812_t
Valid prediction for GeneMark_model.85809_t
Valid prediction for GeneMark_model.85817_t
Valid prediction for snap_scaffold_21-snap.2017-T1
Valid prediction for snap_scaffold_21-snap.2022-T1
Valid prediction for Augustus_model.g33252.t1
Valid prediction for GeneMark_model.85819_t
Valid prediction for snap_scaffold_21-snap.2029-T1
Valid prediction for snap_scaffold_21-snap.2015-T1
Valid prediction for GlimmerHMM_glimmerT_49566-T1
Valid prediction for GeneMark_model.85811_t
Valid prediction for snap_scaffold_21-snap.2037-T1
Valid prediction for GlimmerHMM_glimmerT_49576-T1
Valid prediction for GeneMark_model.85780_t
Valid prediction for Augustus_model.g33256.t1
Valid prediction for Augustus_model.g33251.t1
Valid prediction for GeneMark_model.85790_t
Valid prediction for GeneMark_model.85799_t
Valid prediction for GeneMark_model.85793_t
Valid prediction for GlimmerHMM_glimmerT_49577-T1
Valid prediction for snap_scaffold_21-snap.2013-T1
Valid prediction for snap_scaffold_21-snap.2016-T1
Valid prediction for GlimmerHMM_glimmerT_49579-T1
Valid prediction for GlimmerHMM_glimmerT_49584-T1
Valid prediction for GeneMark_model.85807_t
Valid prediction for GeneMark_model.85805_t
Valid prediction for snap_scaffold_21-snap.2040-T1
Valid prediction for GeneMark_model.85822_t
Valid prediction for GeneMark_model.85791_t
Valid prediction for Augustus_model.g33259.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_21-snap.2038-T1
Valid prediction for Augustus_model.g33257.t1
Valid prediction for GeneMark_model.85798_t
Valid prediction for GeneMark_model.85784_t
Valid prediction for snap_scaffold_21-snap.2024-T1
Valid prediction for GeneMark_model.85804_t
Valid prediction for GeneMark_model.85792_t
Valid prediction for GeneMark_model.85806_t
Valid prediction for GlimmerHMM_glimmerT_49573-T1
Valid prediction for GeneMark_model.85821_t
Valid prediction for GeneMark_model.85800_t
Valid prediction for GeneMark_model.85794_t
Valid prediction for GeneMark_model.85796_t
Valid prediction for Augustus_model.g33260.t1
Valid prediction for GeneMark_model.85814_t
Valid prediction for GeneMark_model.85786_t
Valid prediction for GeneMark_model.85813_t
Valid prediction for GlimmerHMM_glimmerT_49578-T1
Valid prediction for snap_scaffold_21-snap.2032-T1
Valid prediction for GlimmerHMM_glimmerT_49582-T1
Valid prediction for Augustus_model.g33263.t1
Valid prediction for GeneMark_model.85810_t
Valid prediction for GlimmerHMM_glimmerT_49583-T1
Valid prediction for snap_scaffold_21-snap.2014-T1
Valid prediction for Augustus_model.g33265.t1
Valid prediction for GeneMark_model.85802_t
Valid prediction for snap_scaffold_21-snap.2012-T1
Valid prediction for snap_scaffold_21-snap.2021-T1
Valid prediction for snap_scaffold_21-snap.2018-T1
Valid prediction for GeneMark_model.85803_t
Valid prediction for snap_scaffold_21-snap.2023-T1
Valid prediction for snap_scaffold_21-snap.2046-T1
Valid prediction for GeneMark_model.85808_t
Valid prediction for snap_scaffold_21-snap.2041-T1
Valid prediction for snap_scaffold_21-snap.2031-T1
Valid prediction for snap_scaffold_21-snap.2035-T1
Valid prediction for GeneMark_model.85785_t
Valid prediction for snap_scaffold_21-snap.2019-T1
Valid prediction for GlimmerHMM_glimmerT_49571-T1
Valid prediction for snap_scaffold_21-snap.2048-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for Augustus_model.g33254.t1
Valid prediction for GeneMark_model.85781_t
Valid prediction for GlimmerHMM_glimmerT_49580-T1
Valid prediction for GlimmerHMM_glimmerT_49569-T1
Valid prediction for snap_scaffold_21-snap.2043-T1
Valid prediction for GeneMark_model.85818_t
Valid prediction for GeneMark_model.85783_t
Valid prediction for GeneMark_model.85820_t
Valid prediction for GlimmerHMM_glimmerT_49575-T1
Valid prediction for Augustus_model.g33264.t1
Valid prediction for Augustus_model.g33262.t1
Valid prediction for snap_scaffold_21-snap.2026-T1
Valid prediction for snap_scaffold_21-snap.2027-T1
Valid prediction for GeneMark_model.85816_t
Valid prediction for snap_scaffold_21-snap.2025-T1
Valid prediction for GlimmerHMM_glimmerT_49585-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7270, rend_intergenic: 4938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27211, rend_intergenic: 23795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32299, rend_intergenic: 28293  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39877, rend_intergenic: 36230  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64785, rend_intergenic: 62640  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74405, rend_intergenic: 73240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89357, rend_intergenic: 82184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93437, rend_intergenic: 89408  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102041, rend_intergenic: 101348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104762, rend_intergenic: 102773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107392, rend_intergenic: 105557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110087, rend_intergenic: 107411  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115247, rend_intergenic: 112783  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117876, rend_intergenic: 115646  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123394, rend_intergenic: 118000  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 126365
-exon list size: 515


building trellis

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3.9    
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9.1    
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13.9    
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16.6    
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17.0    
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17.6    
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18.6    
18.8    
19.0    
19.1    
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19.5    
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20.1    
20.3    
20.5    
20.7    
20.9    
21.1    
21.3    
21.5    
21.7    
21.9    
22.1    
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22.6    
22.8    
23.0    
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24.6    
24.8    
25.0    
25.1    
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25.5    
25.7    
25.9    
26.1    
26.3    
26.5    
26.7    
26.9    
27.1    
27.3    
27.5    
27.7    
27.9    
28.0    
28.2    
28.4    
28.6    
28.8    
29.0    
29.2    
29.4    
29.6    
29.8    
30.0    
30.2    
30.4    
30.6    
30.8    
30.9    
31.1    
31.3    
31.5    
31.7    
31.9    
32.1    
32.3    
32.5    
32.7    
32.9    
33.1    
33.3    
33.5    
33.7    
33.8    
34.0    
34.2    
34.4    
34.6    
34.8    
35.0    
35.2    
35.4    
35.6    
35.8    
36.0    
36.2    
36.4    
36.6    
36.8    
36.9    
37.1    
37.3    
37.5    
37.7    
37.9    
38.1    
38.3    
38.5    
38.7    
38.9    
39.1    
39.3    
39.5    
39.7    
39.8    
40.0    
40.2    
40.4    
40.6    
40.8    
41.0    
41.2    
41.4    
41.6    
41.8    
42.0    
42.2    
42.4    
42.6    
42.7    
42.9    
43.1    
43.3    
43.5    
43.7    
43.9    
44.1    
44.3    
44.5    
44.7    
44.9    
45.1    
45.3    
45.5    
45.6    
45.8    
46.0    
46.2    
46.4    
46.6    
46.8    
47.0    
47.2    
47.4    
47.6    
47.8    
48.0    
48.2    
48.4    
48.5    
48.7    
48.9    
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49.3    
49.5    
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49.9    
50.1    
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50.9    
51.1    
51.3    
51.5    
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51.8    
52.0    
52.2    
52.4    
52.6    
52.8    
53.0    
53.2    
53.4    
53.6    
53.8    
54.0    
54.2    
54.4    
54.5    
54.7    
54.9    
55.1    
55.3    
55.5    
55.7    
55.9    
56.1    
56.3    
56.5    
56.7    
56.9    
57.1    
57.3    
57.4    
57.6    
57.8    
58.0    
58.2    
58.4    
58.6    
58.8    
59.0    
59.2    
59.4    
59.6    
59.8    
60.0    
60.2    
60.3    
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60.9    
61.1    
61.3    
61.5    
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61.9    
62.1    
62.3    
62.5    
62.7    
62.9    
63.1    
63.2    
63.4    
63.6    
63.8    
64.0    
64.2    
64.4    
64.6    
64.8    
65.0    
65.2    
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65.6    
65.8    
66.0    
66.2    
66.3    
66.5    
66.7    
66.9    
67.1    
67.3    
67.5    
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68.1    
68.3    
68.5    
68.7    
68.9    
69.1    
69.2    
69.4    
69.6    
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70.0    
70.2    
70.4    
70.6    
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71.0    
71.2    
71.4    
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71.8    
72.0    
72.1    
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73.1    
73.3    
73.5    
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73.9    
74.1    
74.3    
74.5    
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74.9    
75.0    
75.2    
75.4    
75.6    
75.8    
76.0    
76.2    
76.4    
76.6    
76.8    
77.0    
77.2    
77.4    
77.6    
77.8    
77.9    
78.1    
78.3    
78.5    
78.7    
78.9    
79.1    
79.3    
79.5    
79.7    
79.9    
80.1    
80.3    
80.5    
80.7    
80.9    
81.0    
81.2    
81.4    
81.6    
81.8    
82.0    
82.2    
82.4    
82.6    
82.8    
83.0    
83.2    
83.4    
83.6    
83.8    
83.9    
84.1    
84.3    
84.5    
84.7    
84.9    
85.1    
85.3    
85.5    
85.7    
85.9    
86.1    
86.3    
86.5    
86.7    
86.8    
87.0    
87.2    
87.4    
87.6    
87.8    
88.0    
88.2    
88.4    
88.6    
88.8    
89.0    
89.2    
89.4    
89.6    
89.7    
89.9    
90.1    
90.3    
90.5    
90.7    
90.9    
91.1    
91.3    
91.5    
91.7    
91.9    
92.1    
92.3    
92.5    
92.6    
92.8    
93.0    
93.2    
93.4    
93.6    
93.8    
94.0    
94.2    
94.4    
94.6    
94.8    
95.0    
95.2    
95.4    
95.6    
95.7    
95.9    
96.1    
96.3    
96.5    
96.7    
96.9    
97.1    
97.3    
97.5    
97.7    
97.9    
98.1    
98.3    
98.5    
98.6    
98.8    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 7270, rend_intergenic: 4938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27211, rend_intergenic: 23795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32299, rend_intergenic: 28293  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39877, rend_intergenic: 36230  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64785, rend_intergenic: 62640  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74405, rend_intergenic: 73240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89357, rend_intergenic: 82184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93437, rend_intergenic: 89408  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102041, rend_intergenic: 101348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104762, rend_intergenic: 102773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107392, rend_intergenic: 105557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110087, rend_intergenic: 107411  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115247, rend_intergenic: 112783  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117876, rend_intergenic: 115646  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123394, rend_intergenic: 118000  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support