-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_21/scaffold_21_4463326-4561891

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_21-snap.887-T1
Valid prediction for GeneMark_model.84608_t
Valid prediction for GlimmerHMM_glimmerT_48737-T1
Valid prediction for Augustus_model.g32616.t1
Valid prediction for snap_scaffold_21-snap.871-T1
Valid prediction for snap_scaffold_21-snap.876-T1
Valid prediction for snap_scaffold_21-snap.877-T1
Valid prediction for GeneMark_model.84587_t
Valid prediction for snap_scaffold_21-snap.882-T1
Valid prediction for Augustus_model.g32612.t1
Valid prediction for snap_scaffold_21-snap.874-T1
Valid prediction for snap_scaffold_21-snap.867-T1
Valid prediction for Augustus_model.g32620.t1
Valid prediction for Augustus_model.g32621.t1
Valid prediction for GlimmerHMM_glimmerT_48731-T1
Valid prediction for GlimmerHMM_glimmerT_48732-T1
Valid prediction for Augustus_model.g32617.t1
Valid prediction for GlimmerHMM_glimmerT_48727-T1
Valid prediction for GeneMark_model.84606_t
Valid prediction for GlimmerHMM_glimmerT_48725-T1
Valid prediction for GeneMark_model.84596_t
Valid prediction for snap_scaffold_21-snap.875-T1
Valid prediction for GeneMark_model.84591_t
Valid prediction for snap_scaffold_21-snap.889-T1
Valid prediction for GeneMark_model.84597_t
Valid prediction for GeneMark_model.84586_t
Valid prediction for snap_scaffold_21-snap.885-T1
Valid prediction for GlimmerHMM_glimmerT_48739-T1
Valid prediction for snap_scaffold_21-snap.880-T1
Valid prediction for GeneMark_model.84602_t
Valid prediction for snap_scaffold_21-snap.890-T1
Valid prediction for snap_scaffold_21-snap.883-T1
Valid prediction for GeneMark_model.84589_t
Valid prediction for GeneMark_model.84600_t
Valid prediction for snap_scaffold_21-snap.869-T1
Valid prediction for GeneMark_model.84605_t
Valid prediction for snap_scaffold_21-snap.884-T1
Valid prediction for snap_scaffold_21-snap.868-T1
Valid prediction for GlimmerHMM_glimmerT_48729-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.84607_t
Valid prediction for GeneMark_model.84592_t
Valid prediction for snap_scaffold_21-snap.878-T1
Valid prediction for snap_scaffold_21-snap.886-T1
Valid prediction for Augustus_model.g32619.t1
Valid prediction for snap_scaffold_21-snap.870-T1
Valid prediction for Augustus_model.g32610.t1
Valid prediction for GlimmerHMM_glimmerT_48726-T1
Valid prediction for GeneMark_model.84594_t
Valid prediction for snap_scaffold_21-snap.891-T1
Valid prediction for GeneMark_model.84595_t
Valid prediction for snap_scaffold_21-snap.866-T1
Valid prediction for snap_scaffold_21-snap.881-T1
Valid prediction for snap_scaffold_21-snap.879-T1
Valid prediction for GeneMark_model.84588_t
Valid prediction for GeneMark_model.84604_t
Valid prediction for GeneMark_model.84585_t
Valid prediction for Augustus_model.g32615.t1
Valid prediction for snap_scaffold_21-snap.872-T1
Valid prediction for snap_scaffold_21-snap.873-T1
Valid prediction for GlimmerHMM_glimmerT_48733-T1
Valid prediction for GlimmerHMM_glimmerT_48728-T1
Valid prediction for GlimmerHMM_glimmerT_48738-T1
Valid prediction for Augustus_model.g32614.t1
Valid prediction for GeneMark_model.84609_t
Valid prediction for GeneMark_model.84603_t
Valid prediction for GlimmerHMM_glimmerT_48735-T1
Valid prediction for GlimmerHMM_glimmerT_48736-T1
Valid prediction for GlimmerHMM_glimmerT_48734-T1
Valid prediction for Augustus_model.g32609.t1
Valid prediction for Augustus_model.g32611.t1
Valid prediction for snap_scaffold_21-snap.888-T1
Valid prediction for Augustus_model.g32613.t1
Valid prediction for GeneMark_model.84593_t
Valid prediction for GeneMark_model.84599_t
Valid prediction for GlimmerHMM_glimmerT_48730-T1
Valid prediction for GeneMark_model.84590_t
Valid prediction for GeneMark_model.84598_t
Valid prediction for Augustus_model.g32618.t1
Valid prediction for GeneMark_model.84601_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 28798, rend_intergenic: 26215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89566, rend_intergenic: 85314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 98566
-exon list size: 298


building trellis

0.3    
0.7    
1.0    
1.3    
1.7    
2.0    
2.3    
2.7    
3.0    
3.3    
3.7    
4.0    
4.3    
4.7    
5.0    
5.3    
5.7    
6.0    
6.3    
6.7    
7.0    
7.3    
7.7    
8.0    
8.3    
8.7    
9.0    
9.3    
9.7    
10.0    
10.3    
10.7    
11.0    
11.3    
11.7    
12.0    
12.3    
12.7    
13.0    
13.3    
13.7    
14.0    
14.3    
14.7    
15.0    
15.3    
15.7    
16.0    
16.3    
16.7    
17.0    
17.3    
17.7    
18.0    
18.3    
18.7    
19.0    
19.3    
19.7    
20.0    
20.3    
20.7    
21.0    
21.3    
21.7    
22.0    
22.3    
22.7    
23.0    
23.3    
23.7    
24.0    
24.3    
24.7    
25.0    
25.3    
25.7    
26.0    
26.3    
26.7    
27.0    
27.3    
27.7    
28.0    
28.3    
28.7    
29.0    
29.3    
29.7    
30.0    
30.3    
30.7    
31.0    
31.3    
31.7    
32.0    
32.3    
32.7    
33.0    
33.3    
33.7    
34.0    
34.3    
34.7    
35.0    
35.3    
35.7    
36.0    
36.3    
36.7    
37.0    
37.3    
37.7    
38.0    
38.3    
38.7    
39.0    
39.3    
39.7    
40.0    
40.3    
40.7    
41.0    
41.3    
41.7    
42.0    
42.3    
42.7    
43.0    
43.3    
43.7    
44.0    
44.3    
44.7    
45.0    
45.3    
45.7    
46.0    
46.3    
46.7    
47.0    
47.3    
47.7    
48.0    
48.3    
48.7    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.3    
51.7    
52.0    
52.3    
52.7    
53.0    
53.3    
53.7    
54.0    
54.3    
54.7    
55.0    
55.3    
55.7    
56.0    
56.3    
56.7    
57.0    
57.3    
57.7    
58.0    
58.3    
58.7    
59.0    
59.3    
59.7    
60.0    
60.3    
60.7    
61.0    
61.3    
61.7    
62.0    
62.3    
62.7    
63.0    
63.3    
63.7    
64.0    
64.3    
64.7    
65.0    
65.3    
65.7    
66.0    
66.3    
66.7    
67.0    
67.3    
67.7    
68.0    
68.3    
68.7    
69.0    
69.3    
69.7    
70.0    
70.3    
70.7    
71.0    
71.3    
71.7    
72.0    
72.3    
72.7    
73.0    
73.3    
73.7    
74.0    
74.3    
74.7    
75.0    
75.3    
75.7    
76.0    
76.3    
76.7    
77.0    
77.3    
77.7    
78.0    
78.3    
78.7    
79.0    
79.3    
79.7    
80.0    
80.3    
80.7    
81.0    
81.3    
81.7    
82.0    
82.3    
82.7    
83.0    
83.3    
83.7    
84.0    
84.3    
84.7    
85.0    
85.3    
85.7    
86.0    
86.3    
86.7    
87.0    
87.3    
87.7    
88.0    
88.3    
88.7    
89.0    
89.3    
89.7    
90.0    
90.3    
90.7    
91.0    
91.3    
91.7    
92.0    
92.3    
92.7    
93.0    
93.3    
93.7    
94.0    
94.3    
94.7    
95.0    
95.3    
95.7    
96.0    
96.3    
96.7    
97.0    
97.3    
97.7    
98.0    
98.3    
98.7    
99.0    
99.3    
99.7    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 28798, rend_intergenic: 26215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89566, rend_intergenic: 85314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support