-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_21/scaffold_21_4298394-4468112

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_48711-T1
Valid prediction for Augustus_model.g32593.t1
Valid prediction for GeneMark_model.84577_t
Valid prediction for GeneMark_model.84569_t
Valid prediction for GeneMark_model.84539_t
Valid prediction for GlimmerHMM_glimmerT_48719-T1
Valid prediction for GeneMark_model.84563_t
Valid prediction for GeneMark_model.84581_t
Valid prediction for GeneMark_model.84565_t
Valid prediction for snap_scaffold_21-snap.849-T1
Valid prediction for snap_scaffold_21-snap.831-T1
Valid prediction for GeneMark_model.84551_t
Valid prediction for Augustus_model.g32608.t1
Valid prediction for GeneMark_model.84546_t
Valid prediction for GeneMark_model.84557_t
Valid prediction for snap_scaffold_21-snap.846-T1
Valid prediction for GlimmerHMM_glimmerT_48718-T1
Valid prediction for GeneMark_model.84535_t
Valid prediction for snap_scaffold_21-snap.859-T1
Valid prediction for GlimmerHMM_glimmerT_48723-T1
Valid prediction for GeneMark_model.84582_t
Valid prediction for snap_scaffold_21-snap.852-T1
Valid prediction for snap_scaffold_21-snap.829-T1
Valid prediction for Augustus_model.g32590.t1
Valid prediction for snap_scaffold_21-snap.842-T1
Valid prediction for GlimmerHMM_glimmerT_48720-T1
Valid prediction for GlimmerHMM_glimmerT_48712-T1
Valid prediction for snap_scaffold_21-snap.843-T1
Valid prediction for GlimmerHMM_glimmerT_48708-T1
Valid prediction for snap_scaffold_21-snap.832-T1
Valid prediction for snap_scaffold_21-snap.835-T1
Valid prediction for Augustus_model.g32589.t1
Valid prediction for snap_scaffold_21-snap.865-T1
Valid prediction for Augustus_model.g32603.t1
Valid prediction for snap_scaffold_21-snap.845-T1
Valid prediction for GlimmerHMM_glimmerT_48709-T1
Valid prediction for snap_scaffold_21-snap.824-T1
Valid prediction for GeneMark_model.84533_t
Valid prediction for snap_scaffold_21-snap.841-T1
Valid prediction for GeneMark_model.84575_t
Valid prediction for Augustus_model.g32597.t1
Valid prediction for GeneMark_model.84542_t
Valid prediction for GeneMark_model.84571_t
Valid prediction for GeneMark_model.84558_t
Valid prediction for GeneMark_model.84555_t
Valid prediction for snap_scaffold_21-snap.854-T1
Valid prediction for snap_scaffold_21-snap.857-T1
Valid prediction for snap_scaffold_21-snap.840-T1
Valid prediction for snap_scaffold_21-snap.862-T1
Valid prediction for GeneMark_model.84573_t
Valid prediction for GeneMark_model.84561_t
Valid prediction for snap_scaffold_21-snap.827-T1
Valid prediction for snap_scaffold_21-snap.822-T1
Valid prediction for GlimmerHMM_glimmerT_48717-T1
Valid prediction for snap_scaffold_21-snap.863-T1
Valid prediction for GeneMark_model.84536_t
Valid prediction for GlimmerHMM_glimmerT_48713-T1
Valid prediction for snap_scaffold_21-snap.821-T1
Valid prediction for snap_scaffold_21-snap.838-T1
Valid prediction for snap_scaffold_21-snap.860-T1
Valid prediction for GeneMark_model.84560_t
Valid prediction for snap_scaffold_21-snap.839-T1
Valid prediction for GeneMark_model.84554_t
Valid prediction for Augustus_model.g32596.t1
Valid prediction for Augustus_model.g32606.t1
Valid prediction for snap_scaffold_21-snap.850-T1
Valid prediction for GeneMark_model.84556_t
Valid prediction for snap_scaffold_21-snap.856-T1
Valid prediction for GlimmerHMM_glimmerT_48710-T1
Valid prediction for GeneMark_model.84548_t
Valid prediction for GeneMark_model.84550_t
Valid prediction for GeneMark_model.84567_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.84552_t
Valid prediction for GeneMark_model.84578_t
Valid prediction for GlimmerHMM_glimmerT_48707-T1
Valid prediction for Augustus_model.g32605.t1
Valid prediction for snap_scaffold_21-snap.828-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for GeneMark_model.84570_t
Valid prediction for GlimmerHMM_glimmerT_48721-T1
Valid prediction for GeneMark_model.84538_t
Valid prediction for Augustus_model.g32598.t1
Valid prediction for snap_scaffold_21-snap.825-T1
Valid prediction for GeneMark_model.84564_t
Valid prediction for snap_scaffold_21-snap.837-T1
Valid prediction for GeneMark_model.84549_t
Valid prediction for snap_scaffold_21-snap.826-T1
Valid prediction for GeneMark_model.84544_t
Valid prediction for GlimmerHMM_glimmerT_48714-T1
Valid prediction for Augustus_model.g32594.t1
Valid prediction for GeneMark_model.84579_t
Valid prediction for GlimmerHMM_glimmerT_48706-T1
Valid prediction for Augustus_model.g32595.t1
Valid prediction for Augustus_model.g32600.t1
Valid prediction for snap_scaffold_21-snap.836-T1
Valid prediction for snap_scaffold_21-snap.858-T1
Valid prediction for snap_scaffold_21-snap.851-T1
Valid prediction for GlimmerHMM_glimmerT_48702-T1
Valid prediction for GlimmerHMM_glimmerT_48705-T1
Valid prediction for GeneMark_model.84574_t
Valid prediction for Augustus_model.g32604.t1
Valid prediction for Augustus_model.g32591.t1
Valid prediction for Augustus_model.g32601.t1
Valid prediction for Augustus_model.g32592.t1
Valid prediction for GlimmerHMM_glimmerT_48722-T1
Valid prediction for GlimmerHMM_glimmerT_48716-T1
Valid prediction for GeneMark_model.84584_t
Valid prediction for snap_scaffold_21-snap.823-T1
Valid prediction for GeneMark_model.84543_t
Valid prediction for GeneMark_model.84568_t
Valid prediction for GeneMark_model.84537_t
Valid prediction for snap_scaffold_21-snap.848-T1
Valid prediction for GeneMark_model.84534_t
Valid prediction for Augustus_model.g32599.t1
Valid prediction for snap_scaffold_21-snap.855-T1
Valid prediction for GeneMark_model.84583_t
Valid prediction for GlimmerHMM_glimmerT_48703-T1
Valid prediction for snap_scaffold_21-snap.864-T1
Valid prediction for GeneMark_model.84547_t
Valid prediction for GeneMark_model.84576_t
Valid prediction for GeneMark_model.84566_t
Valid prediction for GeneMark_model.84559_t
Valid prediction for GeneMark_model.84541_t
Valid prediction for snap_scaffold_21-snap.833-T1
Valid prediction for GlimmerHMM_glimmerT_48715-T1
Valid prediction for snap_scaffold_21-snap.853-T1
Valid prediction for GeneMark_model.84585_t
Valid prediction for snap_scaffold_21-snap.844-T1
Valid prediction for GeneMark_model.84572_t
Valid prediction for GeneMark_model.84562_t
Valid prediction for GeneMark_model.84545_t
Valid prediction for snap_scaffold_21-snap.847-T1
Valid prediction for Augustus_model.g32607.t1
Valid prediction for GeneMark_model.84553_t
Valid prediction for GeneMark_model.84580_t
Valid prediction for Augustus_model.g32602.t1
Valid prediction for GlimmerHMM_glimmerT_48701-T1
Valid prediction for snap_scaffold_21-snap.861-T1
Valid prediction for snap_scaffold_21-snap.834-T1
Valid prediction for GeneMark_model.84540_t
Valid prediction for snap_scaffold_21-snap.830-T1
Valid prediction for GlimmerHMM_glimmerT_48704-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6267, rend_intergenic: 5002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8191, rend_intergenic: 6303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12399, rend_intergenic: 8530  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22190, rend_intergenic: 20276  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42006, rend_intergenic: 37508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94289, rend_intergenic: 90275  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109991, rend_intergenic: 109347  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113666, rend_intergenic: 110441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119716, rend_intergenic: 114386  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126040, rend_intergenic: 124211  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134268, rend_intergenic: 126972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142384, rend_intergenic: 134634  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161425, rend_intergenic: 154493  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163141, rend_intergenic: 161536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 169719
-exon list size: 569


building trellis

0.2    
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0.9    
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3.5    
3.7    
3.9    
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7.0    
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7.9    
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10.9    
11.0    
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12.1    
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18.0    
18.2    
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18.6    
18.7    
18.9    
19.1    
19.3    
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19.6    
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20.8    
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22.9    
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24.0    
24.2    
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24.7    
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25.7    
25.9    
26.1    
26.3    
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26.6    
26.8    
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27.3    
27.5    
27.7    
27.8    
28.0    
28.2    
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28.9    
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29.6    
29.8    
29.9    
30.1    
30.3    
30.5    
30.6    
30.8    
31.0    
31.2    
31.3    
31.5    
31.7    
31.9    
32.0    
32.2    
32.4    
32.6    
32.7    
32.9    
33.1    
33.3    
33.5    
33.6    
33.8    
34.0    
34.2    
34.3    
34.5    
34.7    
34.9    
35.0    
35.2    
35.4    
35.6    
35.7    
35.9    
36.1    
36.3    
36.4    
36.6    
36.8    
37.0    
37.1    
37.3    
37.5    
37.7    
37.8    
38.0    
38.2    
38.4    
38.5    
38.7    
38.9    
39.1    
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39.6    
39.8    
39.9    
40.1    
40.3    
40.5    
40.6    
40.8    
41.0    
41.2    
41.3    
41.5    
41.7    
41.9    
42.0    
42.2    
42.4    
42.6    
42.7    
42.9    
43.1    
43.3    
43.4    
43.6    
43.8    
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44.7    
44.8    
45.0    
45.2    
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46.6    
46.8    
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47.1    
47.3    
47.5    
47.6    
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48.0    
48.2    
48.3    
48.5    
48.7    
48.9    
49.0    
49.2    
49.4    
49.6    
49.7    
49.9    
50.1    
50.3    
50.4    
50.6    
50.8    
51.0    
51.1    
51.3    
51.5    
51.7    
51.8    
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52.2    
52.4    
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52.9    
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53.6    
53.8    
53.9    
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54.6    
54.8    
55.0    
55.2    
55.3    
55.5    
55.7    
55.9    
56.0    
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56.6    
56.7    
56.9    
57.1    
57.3    
57.4    
57.6    
57.8    
58.0    
58.1    
58.3    
58.5    
58.7    
58.8    
59.0    
59.2    
59.4    
59.5    
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59.9    
60.1    
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60.4    
60.6    
60.8    
60.9    
61.1    
61.3    
61.5    
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62.0    
62.2    
62.3    
62.5    
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62.9    
63.0    
63.2    
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63.6    
63.7    
63.9    
64.1    
64.3    
64.4    
64.6    
64.8    
65.0    
65.1    
65.3    
65.5    
65.7    
65.8    
66.0    
66.2    
66.4    
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66.7    
66.9    
67.1    
67.3    
67.4    
67.6    
67.8    
68.0    
68.1    
68.3    
68.5    
68.7    
68.8    
69.0    
69.2    
69.4    
69.5    
69.7    
69.9    
70.1    
70.2    
70.4    
70.6    
70.8    
70.9    
71.1    
71.3    
71.5    
71.6    
71.8    
72.0    
72.2    
72.3    
72.5    
72.7    
72.9    
73.0    
73.2    
73.4    
73.6    
73.7    
73.9    
74.1    
74.3    
74.4    
74.6    
74.8    
75.0    
75.1    
75.3    
75.5    
75.7    
75.8    
76.0    
76.2    
76.4    
76.5    
76.7    
76.9    
77.1    
77.2    
77.4    
77.6    
77.8    
77.9    
78.1    
78.3    
78.5    
78.6    
78.8    
79.0    
79.2    
79.3    
79.5    
79.7    
79.9    
80.0    
80.2    
80.4    
80.6    
80.7    
80.9    
81.1    
81.3    
81.4    
81.6    
81.8    
82.0    
82.1    
82.3    
82.5    
82.7    
82.8    
83.0    
83.2    
83.4    
83.5    
83.7    
83.9    
84.1    
84.2    
84.4    
84.6    
84.8    
84.9    
85.1    
85.3    
85.5    
85.6    
85.8    
86.0    
86.2    
86.3    
86.5    
86.7    
86.9    
87.0    
87.2    
87.4    
87.6    
87.7    
87.9    
88.1    
88.3    
88.4    
88.6    
88.8    
89.0    
89.1    
89.3    
89.5    
89.7    
89.8    
90.0    
90.2    
90.4    
90.5    
90.7    
90.9    
91.1    
91.2    
91.4    
91.6    
91.8    
91.9    
92.1    
92.3    
92.5    
92.6    
92.8    
93.0    
93.2    
93.3    
93.5    
93.7    
93.9    
94.0    
94.2    
94.4    
94.6    
94.7    
94.9    
95.1    
95.3    
95.4    
95.6    
95.8    
96.0    
96.1    
96.3    
96.5    
96.7    
96.8    
97.0    
97.2    
97.4    
97.5    
97.7    
97.9    
98.1    
98.2    
98.4    
98.6    
98.8    
98.9    
99.1    
99.3    
99.5    
99.6    
99.8    
-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 6267, rend_intergenic: 5002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8191, rend_intergenic: 6303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12399, rend_intergenic: 8530  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22190, rend_intergenic: 20276  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42006, rend_intergenic: 37508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94289, rend_intergenic: 90275  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109991, rend_intergenic: 109347  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113666, rend_intergenic: 110441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119716, rend_intergenic: 114386  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126040, rend_intergenic: 124211  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134268, rend_intergenic: 126972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142384, rend_intergenic: 134634  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161425, rend_intergenic: 154493  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163141, rend_intergenic: 161536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support