-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_21/scaffold_21_3359833-3553689

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.84320_t
Valid prediction for GeneMark_model.84325_t
Valid prediction for Augustus_model.g32503.t1
Valid prediction for GeneMark_model.84338_t
Valid prediction for GlimmerHMM_glimmerT_48573-T1
Valid prediction for Augustus_model.g32497.t1
Valid prediction for snap_scaffold_21-snap.658-T1
Valid prediction for snap_scaffold_21-snap.671-T1
Valid prediction for snap_scaffold_21-snap.662-T1
Valid prediction for GlimmerHMM_glimmerT_48575-T1
Valid prediction for Augustus_model.g32502.t1
Valid prediction for GlimmerHMM_glimmerT_48577-T1
Valid prediction for GlimmerHMM_glimmerT_48566-T1
Valid prediction for Augustus_model.g32508.t1
Valid prediction for snap_scaffold_21-snap.638-T1
Valid prediction for snap_scaffold_21-snap.650-T1
Valid prediction for GlimmerHMM_glimmerT_48563-T1
Valid prediction for GeneMark_model.84323_t
Valid prediction for snap_scaffold_21-snap.665-T1
Valid prediction for GlimmerHMM_glimmerT_48582-T1
Valid prediction for GlimmerHMM_glimmerT_48567-T1
Valid prediction for snap_scaffold_21-snap.649-T1
Valid prediction for snap_scaffold_21-snap.642-T1
Valid prediction for GeneMark_model.84342_t
Valid prediction for GeneMark_model.84344_t
Valid prediction for snap_scaffold_21-snap.656-T1
Valid prediction for snap_scaffold_21-snap.631-T1
Valid prediction for GeneMark_model.84332_t
Valid prediction for snap_scaffold_21-snap.670-T1
Valid prediction for GeneMark_model.84343_t
Valid prediction for snap_scaffold_21-snap.668-T1
Valid prediction for Augustus_model.g32498.t1
Valid prediction for snap_scaffold_21-snap.644-T1
Valid prediction for Augustus_model.g32495.t1
Valid prediction for GeneMark_model.84328_t
Valid prediction for GlimmerHMM_glimmerT_48570-T1
Valid prediction for Augustus_model.g32506.t1
Valid prediction for snap_scaffold_21-snap.632-T1
Valid prediction for GeneMark_model.84349_t
Valid prediction for GeneMark_model.84314_t
Valid prediction for snap_scaffold_21-snap.645-T1
Valid prediction for GeneMark_model.84341_t
Valid prediction for GlimmerHMM_glimmerT_48585-T1
Valid prediction for snap_scaffold_21-snap.667-T1
Valid prediction for GeneMark_model.84329_t
Valid prediction for GlimmerHMM_glimmerT_48579-T1
Valid prediction for Augustus_model.g32509.t1
Valid prediction for GlimmerHMM_glimmerT_48572-T1
Valid prediction for snap_scaffold_21-snap.655-T1
Valid prediction for Augustus_model.g32494.t1
Valid prediction for GlimmerHMM_glimmerT_48564-T1
Valid prediction for snap_scaffold_21-snap.654-T1
Valid prediction for snap_scaffold_21-snap.633-T1
Valid prediction for snap_scaffold_21-snap.637-T1
Valid prediction for GeneMark_model.84316_t
Valid prediction for GeneMark_model.84310_t
Valid prediction for GlimmerHMM_glimmerT_48580-T1
Valid prediction for GeneMark_model.84339_t
Valid prediction for GlimmerHMM_glimmerT_48584-T1
Valid prediction for snap_scaffold_21-snap.669-T1
Valid prediction for GeneMark_model.84321_t
Valid prediction for GeneMark_model.84347_t
Valid prediction for GeneMark_model.84313_t
Valid prediction for Augustus_model.g32504.t1
Valid prediction for GeneMark_model.84317_t
Valid prediction for Augustus_model.g32493.t1
Valid prediction for GeneMark_model.84326_t
Valid prediction for snap_scaffold_21-snap.661-T1
Valid prediction for GeneMark_model.84311_t
Valid prediction for Augustus_model.g32505.t1
Valid prediction for GeneMark_model.84333_t
Valid prediction for GlimmerHMM_glimmerT_48568-T1
Valid prediction for snap_scaffold_21-snap.652-T1
Valid prediction for GeneMark_model.84335_t
Valid prediction for snap_scaffold_21-snap.663-T1
Valid prediction for snap_scaffold_21-snap.636-T1
Valid prediction for GlimmerHMM_glimmerT_48581-T1
Valid prediction for GeneMark_model.84346_t
Valid prediction for GeneMark_model.84351_t
Valid prediction for snap_scaffold_21-snap.640-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.84337_t
Valid prediction for snap_scaffold_21-snap.639-T1
Valid prediction for GeneMark_model.84334_t
Valid prediction for GlimmerHMM_glimmerT_48562-T1
Valid prediction for GeneMark_model.84336_t
Valid prediction for GeneMark_model.84312_t
Valid prediction for snap_scaffold_21-snap.641-T1
Valid prediction for snap_scaffold_21-snap.643-T1
Valid prediction for snap_scaffold_21-snap.630-T1
Valid prediction for Augustus_model.g32499.t1
Valid prediction for Augustus_model.g32492.t1
Valid prediction for GlimmerHMM_glimmerT_48576-T1
Valid prediction for snap_scaffold_21-snap.653-T1
Valid prediction for snap_scaffold_21-snap.664-T1
Valid prediction for snap_scaffold_21-snap.646-T1
Valid prediction for GlimmerHMM_glimmerT_48561-T1
Valid prediction for GlimmerHMM_glimmerT_48565-T1
Valid prediction for snap_scaffold_21-snap.660-T1
Valid prediction for Augustus_model.g32496.t1
Valid prediction for snap_scaffold_21-snap.659-T1
Valid prediction for GlimmerHMM_glimmerT_48583-T1
Valid prediction for GeneMark_model.84315_t
Valid prediction for snap_scaffold_21-snap.666-T1
Valid prediction for GeneMark_model.84318_t
Valid prediction for GeneMark_model.84324_t
Valid prediction for snap_scaffold_21-snap.647-T1
Valid prediction for GeneMark_model.84352_t
Valid prediction for GeneMark_model.84340_t
Valid prediction for snap_scaffold_21-snap.648-T1
Valid prediction for GeneMark_model.84322_t
Valid prediction for GlimmerHMM_glimmerT_48569-T1
Valid prediction for GeneMark_model.84348_t
Valid prediction for snap_scaffold_21-snap.628-T1
Valid prediction for Augustus_model.g32491.t1
Valid prediction for snap_scaffold_21-snap.657-T1
Valid prediction for GeneMark_model.84319_t
Valid prediction for GlimmerHMM_glimmerT_48571-T1
Valid prediction for GlimmerHMM_glimmerT_48578-T1
Valid prediction for Augustus_model.g32490.t1
Valid prediction for GeneMark_model.84327_t
Valid prediction for GlimmerHMM_glimmerT_48560-T1
Valid prediction for snap_scaffold_21-snap.651-T1
Valid prediction for Augustus_model.g32507.t1
Valid prediction for GeneMark_model.84330_t
Valid prediction for GeneMark_model.84350_t
Valid prediction for snap_scaffold_21-snap.635-T1
Valid prediction for GeneMark_model.84331_t
Valid prediction for GeneMark_model.84309_t
Valid prediction for Augustus_model.g32500.t1
Valid prediction for snap_scaffold_21-snap.634-T1
Valid prediction for snap_scaffold_21-snap.629-T1
Valid prediction for GlimmerHMM_glimmerT_48574-T1
Valid prediction for Augustus_model.g32501.t1
Valid prediction for GeneMark_model.84345_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16575, rend_intergenic: 9554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19311, rend_intergenic: 16953  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24029, rend_intergenic: 23277  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40908, rend_intergenic: 35431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98091, rend_intergenic: 92925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142037, rend_intergenic: 139755  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150946, rend_intergenic: 143123  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162888, rend_intergenic: 157302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 193857
-exon list size: 522


building trellis

0.2    
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1.0    
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1.7    
1.9    
2.1    
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2.7    
2.9    
3.1    
3.2    
3.4    
3.6    
3.8    
4.0    
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5.7    
5.9    
6.1    
6.3    
6.5    
6.7    
6.9    
7.1    
7.3    
7.4    
7.6    
7.8    
8.0    
8.2    
8.4    
8.6    
8.8    
9.0    
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9.4    
9.5    
9.7    
9.9    
10.1    
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10.7    
10.9    
11.1    
11.3    
11.5    
11.6    
11.8    
12.0    
12.2    
12.4    
12.6    
12.8    
13.0    
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13.7    
13.9    
14.1    
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14.5    
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14.9    
15.1    
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15.6    
15.8    
16.0    
16.2    
16.4    
16.6    
16.8    
17.0    
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17.6    
17.7    
17.9    
18.1    
18.3    
18.5    
18.7    
18.9    
19.1    
19.3    
19.5    
19.7    
19.8    
20.0    
20.2    
20.4    
20.6    
20.8    
21.0    
21.2    
21.4    
21.6    
21.8    
21.9    
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22.5    
22.7    
22.9    
23.1    
23.3    
23.5    
23.7    
23.9    
24.0    
24.2    
24.4    
24.6    
24.8    
25.0    
25.2    
25.4    
25.6    
25.8    
26.0    
26.1    
26.3    
26.5    
26.7    
26.9    
27.1    
27.3    
27.5    
27.7    
27.9    
28.1    
28.2    
28.4    
28.6    
28.8    
29.0    
29.2    
29.4    
29.6    
29.8    
30.0    
30.2    
30.3    
30.5    
30.7    
30.9    
31.1    
31.3    
31.5    
31.7    
31.9    
32.1    
32.3    
32.4    
32.6    
32.8    
33.0    
33.2    
33.4    
33.6    
33.8    
34.0    
34.2    
34.4    
34.5    
34.7    
34.9    
35.1    
35.3    
35.5    
35.7    
35.9    
36.1    
36.3    
36.5    
36.6    
36.8    
37.0    
37.2    
37.4    
37.6    
37.8    
38.0    
38.2    
38.4    
38.5    
38.7    
38.9    
39.1    
39.3    
39.5    
39.7    
39.9    
40.1    
40.3    
40.5    
40.6    
40.8    
41.0    
41.2    
41.4    
41.6    
41.8    
42.0    
42.2    
42.4    
42.6    
42.7    
42.9    
43.1    
43.3    
43.5    
43.7    
43.9    
44.1    
44.3    
44.5    
44.7    
44.8    
45.0    
45.2    
45.4    
45.6    
45.8    
46.0    
46.2    
46.4    
46.6    
46.8    
46.9    
47.1    
47.3    
47.5    
47.7    
47.9    
48.1    
48.3    
48.5    
48.7    
48.9    
49.0    
49.2    
49.4    
49.6    
49.8    
50.0    
50.2    
50.4    
50.6    
50.8    
51.0    
51.1    
51.3    
51.5    
51.7    
51.9    
52.1    
52.3    
52.5    
52.7    
52.9    
53.1    
53.2    
53.4    
53.6    
53.8    
54.0    
54.2    
54.4    
54.6    
54.8    
55.0    
55.2    
55.3    
55.5    
55.7    
55.9    
56.1    
56.3    
56.5    
56.7    
56.9    
57.1    
57.3    
57.4    
57.6    
57.8    
58.0    
58.2    
58.4    
58.6    
58.8    
59.0    
59.2    
59.4    
59.5    
59.7    
59.9    
60.1    
60.3    
60.5    
60.7    
60.9    
61.1    
61.3    
61.5    
61.6    
61.8    
62.0    
62.2    
62.4    
62.6    
62.8    
63.0    
63.2    
63.4    
63.5    
63.7    
63.9    
64.1    
64.3    
64.5    
64.7    
64.9    
65.1    
65.3    
65.5    
65.6    
65.8    
66.0    
66.2    
66.4    
66.6    
66.8    
67.0    
67.2    
67.4    
67.6    
67.7    
67.9    
68.1    
68.3    
68.5    
68.7    
68.9    
69.1    
69.3    
69.5    
69.7    
69.8    
70.0    
70.2    
70.4    
70.6    
70.8    
71.0    
71.2    
71.4    
71.6    
71.8    
71.9    
72.1    
72.3    
72.5    
72.7    
72.9    
73.1    
73.3    
73.5    
73.7    
73.9    
74.0    
74.2    
74.4    
74.6    
74.8    
75.0    
75.2    
75.4    
75.6    
75.8    
76.0    
76.1    
76.3    
76.5    
76.7    
76.9    
77.1    
77.3    
77.5    
77.7    
77.9    
78.1    
78.2    
78.4    
78.6    
78.8    
79.0    
79.2    
79.4    
79.6    
79.8    
80.0    
80.2    
80.3    
80.5    
80.7    
80.9    
81.1    
81.3    
81.5    
81.7    
81.9    
82.1    
82.3    
82.4    
82.6    
82.8    
83.0    
83.2    
83.4    
83.6    
83.8    
84.0    
84.2    
84.4    
84.5    
84.7    
84.9    
85.1    
85.3    
85.5    
85.7    
85.9    
86.1    
86.3    
86.5    
86.6    
86.8    
87.0    
87.2    
87.4    
87.6    
87.8    
88.0    
88.2    
88.4    
88.5    
88.7    
88.9    
89.1    
89.3    
89.5    
89.7    
89.9    
90.1    
90.3    
90.5    
90.6    
90.8    
91.0    
91.2    
91.4    
91.6    
91.8    
92.0    
92.2    
92.4    
92.6    
92.7    
92.9    
93.1    
93.3    
93.5    
93.7    
93.9    
94.1    
94.3    
94.5    
94.7    
94.8    
95.0    
95.2    
95.4    
95.6    
95.8    
96.0    
96.2    
96.4    
96.6    
96.8    
96.9    
97.1    
97.3    
97.5    
97.7    
97.9    
98.1    
98.3    
98.5    
98.7    
98.9    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 16575, rend_intergenic: 9554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19311, rend_intergenic: 16953  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24029, rend_intergenic: 23277  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40908, rend_intergenic: 35431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98091, rend_intergenic: 92925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142037, rend_intergenic: 139755  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150946, rend_intergenic: 143123  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162888, rend_intergenic: 157302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 183019 - 193857
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support