-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_21/scaffold_21_1193920-1432334

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_48272-T1
Valid prediction for GeneMark_model.83860_t
Valid prediction for GeneMark_model.83866_t
Valid prediction for GeneMark_model.83926_t
Valid prediction for snap_scaffold_21-snap.200-T1
Valid prediction for snap_scaffold_21-snap.203-T1
Valid prediction for GeneMark_model.83887_t
Valid prediction for GeneMark_model.83892_t
Valid prediction for snap_scaffold_21-snap.209-T1
Valid prediction for GeneMark_model.83884_t
Valid prediction for snap_scaffold_21-snap.217-T1
Valid prediction for GeneMark_model.83906_t
Valid prediction for GeneMark_model.83874_t
Valid prediction for GeneMark_model.83924_t
Valid prediction for snap_scaffold_21-snap.219-T1
Valid prediction for snap_scaffold_21-snap.224-T1
Valid prediction for GeneMark_model.83872_t
Valid prediction for GeneMark_model.83882_t
Valid prediction for GeneMark_model.83907_t
Valid prediction for snap_scaffold_21-snap.227-T1
Valid prediction for snap_scaffold_21-snap.231-T1
Valid prediction for snap_scaffold_21-snap.232-T1
Valid prediction for GeneMark_model.83904_t
Valid prediction for GlimmerHMM_glimmerT_48277-T1
Valid prediction for snap_scaffold_21-snap.202-T1
Valid prediction for GeneMark_model.83920_t
Valid prediction for snap_scaffold_21-snap.223-T1
Valid prediction for GeneMark_model.83867_t
Valid prediction for snap_scaffold_21-snap.225-T1
Valid prediction for GeneMark_model.83852_t
Valid prediction for snap_scaffold_21-snap.230-T1
Valid prediction for snap_scaffold_21-snap.243-T1
Valid prediction for snap_scaffold_21-snap.207-T1
Valid prediction for snap_scaffold_21-snap.211-T1
Valid prediction for GlimmerHMM_glimmerT_48264-T1
Valid prediction for GlimmerHMM_glimmerT_48268-T1
Valid prediction for snap_scaffold_21-snap.234-T1
Valid prediction for snap_scaffold_21-snap.208-T1
Valid prediction for GlimmerHMM_glimmerT_48261-T1
Valid prediction for GeneMark_model.83876_t
Valid prediction for GeneMark_model.83890_t
Valid prediction for snap_scaffold_21-snap.248-T1
Valid prediction for GeneMark_model.83918_t
Valid prediction for snap_scaffold_21-snap.229-T1
Valid prediction for GeneMark_model.83868_t
Valid prediction for GeneMark_model.83855_t
Valid prediction for snap_scaffold_21-snap.214-T1
Valid prediction for Augustus_model.g32297.t1
Valid prediction for GeneMark_model.83916_t
Valid prediction for Augustus_model.g32295.t1
Valid prediction for snap_scaffold_21-snap.222-T1
Valid prediction for GeneMark_model.83878_t
Valid prediction for snap_scaffold_21-snap.236-T1
Valid prediction for GlimmerHMM_glimmerT_48273-T1
Valid prediction for GlimmerHMM_glimmerT_48280-T1
Valid prediction for snap_scaffold_21-snap.241-T1
Valid prediction for snap_scaffold_21-snap.246-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.83870_t
Valid prediction for GeneMark_model.83901_t
Valid prediction for snap_scaffold_21-snap.244-T1
Valid prediction for snap_scaffold_21-snap.210-T1
Valid prediction for snap_scaffold_21-snap.216-T1
Valid prediction for snap_scaffold_21-snap.233-T1
Valid prediction for GlimmerHMM_glimmerT_48260-T1
Couldn't classify 13502, 13606
Sorry, prediction pasa_asmbl_28359.p1 fails validation.
(GCG)	 CA	13502-13606	GT	AGG
(ATC)	 AG	13691-13763	GT	CGG
(GTA)	 AG	13919-14001	GT	AGG
(ATC)	 AG	14378-14581	GT	AGG
(TCC)	 AG	15465-15599	GT	AGG
(GTG)	 AG	17419-17610	GG	GAG
-recovered pasa_asmbl_28359.p1, terminal, 17419, 17610
-recovered pasa_asmbl_28359.p1, internal, 13691, 13763
-recovered pasa_asmbl_28359.p1, internal, 13919, 14001
-recovered pasa_asmbl_28359.p1, internal, 14378, 14581
-recovered pasa_asmbl_28359.p1, internal, 15465, 15599
Valid prediction for snap_scaffold_21-snap.250-T1
Valid prediction for GlimmerHMM_glimmerT_48265-T1
Valid prediction for HiQ_model.g32282.t1
Valid prediction for GeneMark_model.83886_t
Valid prediction for GlimmerHMM_glimmerT_48288-T1
Valid prediction for snap_scaffold_21-snap.252-T1
Valid prediction for Augustus_model.g32281.t1
Valid prediction for GeneMark_model.83858_t
Valid prediction for GeneMark_model.83894_t
Valid prediction for GeneMark_model.83903_t
Valid prediction for GeneMark_model.83898_t
Valid prediction for Augustus_model.g32290.t1
Valid prediction for GeneMark_model.83851_t
Valid prediction for GlimmerHMM_glimmerT_48283-T1
Valid prediction for GlimmerHMM_glimmerT_48279-T1
Valid prediction for GeneMark_model.83895_t
Valid prediction for snap_scaffold_21-snap.240-T1
Valid prediction for Augustus_model.g32292.t1
Valid prediction for GeneMark_model.83880_t
Valid prediction for GlimmerHMM_glimmerT_48258-T1
Valid prediction for GeneMark_model.83862_t
Valid prediction for GeneMark_model.83914_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.83922_t
Valid prediction for snap_scaffold_21-snap.237-T1
Valid prediction for GeneMark_model.83879_t
Couldn't classify 149177, 149318
Sorry, prediction pasa_asmbl_27423.p1 fails validation.
(GTG)	 GG	149177-149318	GT	AGG
(GTC)	 AG	149581-149763	GT	AGG
(GTA)	 AG	149964-150122	GT	AGG
(GGC)	 AG	150455-150629	GT	AAG
(TGT)	 AG	150748-150881	GT	AGG
(GCG)	 AG	153443-153665	GT	AGG
(TCT)	 AG	155746-155882	GT	TGG
(CCG)	 AG	156531-156633	GT	AGG
(GTA)	 AG	156781-156986	GT	GGG
(GTA)	 AG	157221-157372	GT	AGG
(GTG)	 AG	157600-157708	GT	AGG
(GCT)	 AG	157988-158178	AG	AGA
add_exon() Sorry, pasa_asmbl_27423.p1 149581-149763-terminal-1 is invalid.
-recovered pasa_asmbl_27423.p1, terminal, 149581, 149763
add_exon() Sorry, pasa_asmbl_27423.p1 157600-157708-terminal-3 is invalid.
-recovered pasa_asmbl_27423.p1, terminal, 157600, 157708
-recovered pasa_asmbl_27423.p1, terminal, 157988, 158178
-recovered pasa_asmbl_27423.p1, internal, 149581, 149763
-recovered pasa_asmbl_27423.p1, internal, 149964, 150122
-recovered pasa_asmbl_27423.p1, internal, 150455, 150629
-recovered pasa_asmbl_27423.p1, internal, 150748, 150881
-recovered pasa_asmbl_27423.p1, internal, 153443, 153665
-recovered pasa_asmbl_27423.p1, internal, 155746, 155882
-recovered pasa_asmbl_27423.p1, internal, 156531, 156633
-recovered pasa_asmbl_27423.p1, internal, 156781, 156986
-recovered pasa_asmbl_27423.p1, internal, 157221, 157372
-recovered pasa_asmbl_27423.p1, internal, 157600, 157708
Valid prediction for GlimmerHMM_glimmerT_48289-T1
Couldn't classify 115021, 115149
Sorry, prediction pasa_asmbl_27435.p1 fails validation.
(ATG)	 AC	111771-111848	GT	AGG
(GCC)	 AG	112144-112315	GT	GGG
(GTA)	 AG	114514-114698	GT	CGG
(GCC)	 AG	115021-115149	AA	GGA
-recovered pasa_asmbl_27435.p1, initial, 111771, 111848
-recovered pasa_asmbl_27435.p1, internal, 112144, 112315
-recovered pasa_asmbl_27435.p1, internal, 114514, 114698
Valid prediction for GlimmerHMM_glimmerT_48262-T1
Valid prediction for GlimmerHMM_glimmerT_48285-T1
Valid prediction for GeneMark_model.83857_t
Valid prediction for snap_scaffold_21-snap.254-T1
Valid prediction for Augustus_model.g32291.t1
Valid prediction for GlimmerHMM_glimmerT_48271-T1
Valid prediction for GeneMark_model.83902_t
Valid prediction for snap_scaffold_21-snap.221-T1
Valid prediction for CodingQuarry_transcript_32387-T1
Valid prediction for Augustus_model.g32293.t1
Valid prediction for GeneMark_model.83885_t
Valid prediction for Augustus_model.g32284.t1
Valid prediction for snap_scaffold_21-snap.201-T1
Valid prediction for GeneMark_model.83856_t
Valid prediction for snap_scaffold_21-snap.212-T1
Valid prediction for snap_scaffold_21-snap.218-T1
Valid prediction for GeneMark_model.83899_t
Valid prediction for GeneMark_model.83871_t
Valid prediction for GeneMark_model.83873_t
Valid prediction for GlimmerHMM_glimmerT_48270-T1
Valid prediction for snap_scaffold_21-snap.239-T1
Valid prediction for GeneMark_model.83881_t
Valid prediction for GeneMark_model.83875_t
Valid prediction for GeneMark_model.83913_t
Valid prediction for snap_scaffold_21-snap.220-T1
Valid prediction for GlimmerHMM_glimmerT_48267-T1
Valid prediction for GeneMark_model.83911_t
Valid prediction for GeneMark_model.83889_t
Valid prediction for GeneMark_model.83888_t
Valid prediction for GeneMark_model.83919_t
Valid prediction for GlimmerHMM_glimmerT_48287-T1
Valid prediction for snap_scaffold_21-snap.249-T1
Valid prediction for snap_scaffold_21-snap.228-T1
Valid prediction for GeneMark_model.83925_t
Valid prediction for CodingQuarry_transcript_32388-T1
Valid prediction for Augustus_model.g32285.t1
Valid prediction for snap_scaffold_21-snap.245-T1
Valid prediction for GeneMark_model.83921_t
Valid prediction for GeneMark_model.83893_t
Valid prediction for Augustus_model.g32287.t1
Valid prediction for GeneMark_model.83896_t
Valid prediction for GeneMark_model.83912_t
Valid prediction for snap_scaffold_21-snap.226-T1
Valid prediction for GeneMark_model.83897_t
Valid prediction for pasa_asmbl_27430.p1
Valid prediction for GeneMark_model.83900_t
Valid prediction for GeneMark_model.83923_t
Valid prediction for GeneMark_model.83869_t
Valid prediction for GeneMark_model.83910_t
Valid prediction for snap_scaffold_21-snap.213-T1
Valid prediction for snap_scaffold_21-snap.235-T1
Valid prediction for HiQ_model.g32289.t1
Valid prediction for Augustus_model.g32296.t1
Valid prediction for GlimmerHMM_glimmerT_48276-T1
Valid prediction for snap_scaffold_21-snap.253-T1
Valid prediction for GeneMark_model.83854_t
Valid prediction for GlimmerHMM_glimmerT_48263-T1
Valid prediction for GeneMark_model.83915_t
Valid prediction for GlimmerHMM_glimmerT_48266-T1
Valid prediction for Augustus_model.g32286.t1
Valid prediction for snap_scaffold_21-snap.206-T1
Valid prediction for GeneMark_model.83917_t
Valid prediction for GeneMark_model.83853_t
Valid prediction for GeneMark_model.83905_t
Valid prediction for GlimmerHMM_glimmerT_48275-T1
Valid prediction for CodingQuarry_transcript_32389-T1
Valid prediction for GlimmerHMM_glimmerT_48259-T1
Valid prediction for Augustus_model.g32283.t1
Valid prediction for GeneMark_model.83863_t
Valid prediction for GlimmerHMM_glimmerT_48286-T1
Valid prediction for GeneMark_model.83909_t
Valid prediction for Augustus_model.g32294.t1
Valid prediction for snap_scaffold_21-snap.251-T1
Valid prediction for GeneMark_model.83891_t
Valid prediction for GeneMark_model.83908_t
Valid prediction for GeneMark_model.83861_t
Valid prediction for GlimmerHMM_glimmerT_48282-T1
Valid prediction for GlimmerHMM_glimmerT_48278-T1
Valid prediction for GeneMark_model.83877_t
Valid prediction for snap_scaffold_21-snap.205-T1
Valid prediction for GeneMark_model.83859_t
Valid prediction for GeneMark_model.83883_t
Valid prediction for snap_scaffold_21-snap.215-T1
Valid prediction for snap_scaffold_21-snap.247-T1
Valid prediction for Augustus_model.g32288.t1
Valid prediction for snap_scaffold_21-snap.204-T1
Valid prediction for GlimmerHMM_glimmerT_48281-T1
Valid prediction for CodingQuarry_transcript_32386-T1
Valid prediction for GlimmerHMM_glimmerT_48284-T1
Valid prediction for GeneMark_model.83865_t
Valid prediction for snap_scaffold_21-snap.238-T1
Valid prediction for GlimmerHMM_glimmerT_48269-T1
Valid prediction for snap_scaffold_21-snap.242-T1
Valid prediction for GlimmerHMM_glimmerT_48274-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11282, rend_intergenic: 7270  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49817, rend_intergenic: 28768  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57129, rend_intergenic: 52520  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76231, rend_intergenic: 67654  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89284, rend_intergenic: 84871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110020, rend_intergenic: 103439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132129, rend_intergenic: 115937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141402, rend_intergenic: 138529  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147750, rend_intergenic: 143977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166253, rend_intergenic: 147941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167182, rend_intergenic: 166263  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174292, rend_intergenic: 171419  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193712, rend_intergenic: 191016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204887, rend_intergenic: 198391  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213350, rend_intergenic: 206682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 216619, rend_intergenic: 216415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223512, rend_intergenic: 220466  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 235457, rend_intergenic: 229906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 238415
-exon list size: 971


building trellis

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46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 49 predictions from path traversal
Error with prediction: snap lend_intergenic: 11282, rend_intergenic: 7270  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49817, rend_intergenic: 28768  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57129, rend_intergenic: 52520  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76231, rend_intergenic: 67654  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89284, rend_intergenic: 84871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110020, rend_intergenic: 103439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132129, rend_intergenic: 115937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141402, rend_intergenic: 138529  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147750, rend_intergenic: 143977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166253, rend_intergenic: 147941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167182, rend_intergenic: 166263  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174292, rend_intergenic: 171419  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193712, rend_intergenic: 191016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204887, rend_intergenic: 198391  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213350, rend_intergenic: 206682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 216619, rend_intergenic: 216415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223512, rend_intergenic: 220466  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 235457, rend_intergenic: 229906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support